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[179899_s_at]

Description C04C3.7 /REP_DB=WormBase Gene ID /WP=CE16813 /TR=O44455 /GB=AAB92027.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 03      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 4.2
(-2.9)
A 		2
(-3)
A 		7.8
(-2.8)
A 		154.8
(3)
P 		153
B 14.2
(-3)
A 		22.8
(-2.3)
A 		19.4
(-2.6)
A 		86
(3)
P 		72
C 37.6
(-2.1)
A 		1.5
(-3)
A 		1
(-3)
A 		232.4
(3)
P 		231
avr 18.7
(-2.6) 		8.8
(-3) 		9.4
(-3) 		157.7
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		1.5
(-2.8)
A 		5.1
(-0.5)
A 		1.1
(-3)
A 		6.3
(0.2)
A 		10.8
(3)
A 		10
B 17
(3)
A 		5.5
(-1.6)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		12.1
(1.1)
A 		3
(-2.6)
A 		15
C 1.6
(-3)
A 		28
(3)
A 		2
(-2.9)
A 		5.4
(-2.1)
A 		3.3
(-2.6)
A 		1.9
(-2.9)
A 		26
avr 7
(-0.2) 		11.7
(3) 		3.1
(-2.8) 		2.8
(-3) 		7.2
(-0) 		5.2
(-1.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1.5
(-2.7)
A 		0.4
(-3)
A 		2
(-2.6)
A 		22.7
(3)
P 		22
B 4.5
(-3)
A 		5.6
(-2.5)
A 		4.5
(-3)
A 		18.3
(3)
P 		14
C 12.4
(-1.1)
A 		0.4
(-3)
A 		0.4
(-3)
A 		39.2
(3)
P 		39
avr 6.1
(-2) 		2.1
(-3) 		2.3
(-3) 		26.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		0.5
(-2.5)
A 		1.1
(-0.9)
A 		0.3
(-3)
A 		1.9
(1.2)
A 		2.6
(3)
A 		2
B 5.9
(3)
A 		1.8
(-1.6)
A 		0.5
(-3)
A 		0.5
(-3)
A 		4.9
(1.9)
A 		1.1
(-2.3)
A 		5
C 0.6
(-2.9)
A 		8.6
(3)
A 		0.5
(-3)
A 		1.1
(-2.6)
A 		1.1
(-2.6)
A 		0.6
(-2.9)
A 		8
avr 2.3
(0.4) 		3.6
(3) 		0.7
(-2.8) 		0.6
(-3) 		2.6
(1) 		1.4
(-1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179899_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10689
Sequence Type Exemplar sequence
Representative Public ID C04C3.7 NCBI
Target Description C04C3.7 /REP_DB=WormBase Gene ID /WP=CE16813 /TR=O44455 /GB=AAB92027.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067943(11), NM_074760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067943 NCBI Caenorhabditis elegans C04C3.7 (C04C3.7) mRNA, complete cds. 11/11 None
NM_074760 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-14) (str-14) mRNA, complete cds. 11/11 None
SNAP00000029934 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3432981:3433432:-1 11/11 None
GENEFINDER00000029937 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3431570:3433432:-1 11/11 None
SNAP00000031132 ENSEMBL cdna:SNAP chromosome:CEL140:V:16456079:16457748:-1 11/11 None
GENEFINDER00000031145 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16454652:16463547:-1 11/11 None
C04C3.7 ENSEMBL cdna:known chromosome:CEL140:IV:3432981:3433484:-1 gene:C04C3.7 11/11 None
T08G3.2 ENSEMBL cdna:known chromosome:CEL140:V:16455976:16457748:-1 gene:T08G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16456078-16456583(-) 98.47 98.47
chrIV:3432986-3433490(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol str-14
Ensembl C04C3.7
T08G3.2
Entrez Gene 182198 Entrez gene
188293 Entrez gene
SwissProt O44455 EMBL-EBI
O18070 EMBL-EBI
WormBase CE16813 Wormbase
CE16372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05793 Hypothetical protein T08G3.2 [Caenorhabditis elegans] ref|NP_507161.1| Seven TM Receptor family member (str-14) [Caenorhabditis elegans] 0.0
blast CAB05792 Hypothetical protein T08G3.1 [Caenorhabditis elegans] ref|NP_507162.1| Seven TM Receptor family member (str-15) [Caenorhabditis elegans] 1.0E-146
blast CAB05794 Hypothetical protein T08G3.3 [Caenorhabditis elegans] ref|NP_507163.1| Serpentine Receptor, class H family member (srh-142) [Caenorhabditis elegans] 1.0E-143
blast CAB05792 Hypothetical protein T08G3.1 [Caenorhabditis elegans] ref|NP_507162.1| Seven TM Receptor family member (str-15) [Caenorhabditis elegans] 1.0E-142
blast CAB05793 Hypothetical protein T08G3.2 [Caenorhabditis elegans] ref|NP_507161.1| Seven TM Receptor family member (str-14) [Caenorhabditis elegans] 1.0E-136
blast CAB05792 Hypothetical protein T08G3.1 [Caenorhabditis elegans] ref|NP_507162.1| Seven TM Receptor family member (str-15) [Caenorhabditis elegans] 1.0E-131
blast CAB04818 Hypothetical protein T23D5.7 [Caenorhabditis elegans] ref|NP_506920.2| Seven TM Receptor family member (str-19) [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.6E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.0E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.6E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.6E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.8E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.8E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.6E-11
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500344.1 3 37-59,83-105,115-137
NP_507161.1 7 10-32,45-67,87-109,130-149,207-229,253-275,285-307
C04C3.7 3 37-59,83-105,115-137
T08G3.2 7 10-32,45-67,87-109,130-149,207-229,253-275,285-307
SNAP00000029934 3 20-42,66-88,98-120
GENEFINDER00000029937 4 20-42,66-88,98-120,151-173
SNAP00000031132 7 10-32,45-67,87-109,130-149,207-229,253-275,285-307
GENEFINDER00000031145 15 15-37,58-80,95-117,139-158,197-219,240-262,297-316,323-342,395-417,445-467,477-499,654-676,691-710,812-834,844-866
Sequence
Target Sequence 
>C. ELEGANS:179899_S_AT
caactctacagacacattcatccgctggaacaacgcattcaacacattaaacatgacatt
tgtcggcacacttcaatactctatcatgatattctgcggctacaaattgtattatgaaat
ggaagagaagctcagcattatttcagacgattctcgaaaacttcatcgtcaaattgtcaa
aactcttctgcttcagataataacgccaaccatcgtgatgtactcgccagtgttcttagt
gatttacctaccacttttaaatctggatttcagcctgccaatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCTACAGACACATTCATCCGC 20 189 75 Antisense
TCCGCTGGAACAACGCATTCAACAC 103 597 95 Antisense
ATGACATTTGTCGGCACACTTCAAT 286 45 127 Antisense
TTGTCGGCACACTTCAATACTCTAT 383 707 134 Antisense
TCTATCATGATATTCTGCGGCTACA 40 615 154 Antisense
TCAGACGATTCTCGAAAACTTCATC 467 623 217 Antisense
AATTGTCAAAACTCTTCTGCTTCAG 434 179 246 Antisense
CCAACCATCGTGATGTACTCGCCAG 160 277 280 Antisense
TTCTTAGTGATTTACCTACCACTTT 478 683 307 Antisense
TTACCTACCACTTTTAAATCTGGAT 393 663 318 Antisense
ATCTGGATTTCAGCCTGCCAATGGG 500 31 335 Antisense
Sequence Source Affymetrix Proprietary Database