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[179898_s_at]

Description Y37D8A.9 /REP_DB=WormBase Gene ID /WP=CE20213 /TR=Q9XWW2 /GB=CAA21528.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 88      6grp_total > 69      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 1196
(-3)
P 		1237.7
(3)
P 		1223.4
(0.9)
P 		1210.5
(-0.9)
P 		42
B 1278.8
(3)
P 		1099.5
(-1.7)
P 		1157.8
(-0.2)
P 		1050.3
(-3)
P 		229
C 1323.1
(3)
P 		1173.4
(-0.4)
P 		1101.2
(-2)
P 		1056.4
(-3)
P 		267
avr 1266
(3) 		1170.2
(-0.6) 		1160.8
(-0.9) 		1105.7
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1155
1 2 3 4 5 6 range
A 1484.7
(0.4)
P 		1121.2
(-2.2)
P 		1048.7
(-2.7)
P 		1005.3
(-3)
P 		1358.7
(-0.5)
P 		1852.6
(3)
P 		847
B 1412.3
(-0.2)
P 		1116.6
(-2.3)
P 		1125.3
(-2.2)
P 		1016.9
(-3)
P 		1401.7
(-0.3)
P 		1863.5
(3)
P 		847
C 1082.9
(-1.4)
P 		1083.5
(-1.4)
P 		887.3
(-2.4)
P 		767.3
(-3)
P 		1308.5
(-0.2)
P 		1921.8
(3)
P 		1155
avr 1326.6
(-0.5) 		1107.1
(-1.9) 		1020.4
(-2.4) 		929.8
(-3) 		1356.3
(-0.3) 		1879.3
(3) 		950
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 435.5
(3)
P 		268.7
(-0.9)
P 		319.8
(0.3)
P 		177.2
(-3)
P 		258
B 407.8
(3)
P 		271.6
(-1.4)
P 		268.3
(-1.5)
P 		223.8
(-3)
P 		184
C 438
(3)
P 		337.4
(0.7)
P 		383.8
(1.7)
P 		178.1
(-3)
P 		260
avr 427.1
(3) 		292.6
(-0.4) 		324
(0.4) 		193
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 273.7
(-1.8)
P 		398.8
(1.6)
P 		228.4
(-3)
P 		255
(-2.3)
P 		410
(1.9)
P 		451.1
(3)
P 		223
B 491.4
(0.1)
P 		371.7
(-1.6)
P 		273.2
(-2.9)
P 		269.3
(-3)
P 		569.5
(1.2)
P 		694.9
(3)
P 		426
C 401.4
(0)
P 		330.6
(-0.8)
P 		225.8
(-2.1)
P 		154.3
(-3)
P 		423.4
(0.3)
P 		643.3
(3)
P 		489
avr 388.8
(-0.4) 		367
(-0.7) 		242.5
(-2.7) 		226.2
(-3) 		467.6
(0.9) 		596.4
(3) 		370
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179898_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6283
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.9 NCBI
Target Description Y37D8A.9 /REP_DB=WormBase Gene ID /WP=CE20213 /TR=Q9XWW2 /GB=CAA21528.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067274 NCBI Caenorhabditis elegans human MRG (Mortality factor-Related Gene) related family member (mrg-1) (mrg-1) mRNA, complete cds. 11/11 None
SNAP00000028777 ENSEMBL cdna:SNAP chromosome:CEL140:III:12871391:12874527:-1 11/11 None
GENEFINDER00000028795 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12871391:12874527:-1 11/11 None
Y37D8A.9.1 ENSEMBL cdna:known chromosome:CEL140:III:12871011:12874528:-1 gene:Y37D8A.9 11/11 None
Y37D8A.9.2 ENSEMBL cdna:known chromosome:CEL140:III:12871153:12874527:-1 gene:Y37D8A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12871386-12874523(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mrg-1
Ensembl Y37D8A.9
Entrez Gene 176702 Entrez gene
SwissProt Q9XWW2 EMBL-EBI
WormBase CE20213 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430A:1437802_X_AT similar to mortality factor 4 like 1 mm
MOUSE430A_2:1437802_X_AT similar to mortality factor 4 like 1 mm
MOUSE430_2:1437802_X_AT similar to mortality factor 4 like 1 mm
MG-U74CV2:171106_R_AT similar to mortality factor 4 like 1 mm
MOE430A:1455077_A_AT similar to mortality factor 4 like 1 mm
MOUSE430A_2:1455077_A_AT similar to mortality factor 4 like 1 mm
MOUSE430_2:1455077_A_AT similar to mortality factor 4 like 1 mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21528 Hypothetical protein Y37D8A.9 [Caenorhabditis elegans] ref|NP_499675.1| human MRG (Mortality factor-Related Gene) related family member (mrg-1) [Caenorhabditis elegans] 0.0
blast CAE69556 Hypothetical protein CBG15768 [Caenorhabditis briggsae] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR008676 EMBL-EBI MRG 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179898_S_AT
aaggtcgagcttccgaagccactgagaaagatcctgatcgatgactacgatcttgtctgc
cgttatttcataaacatcgtgccacacgagtattcagttgatcaaatcatcgaggactac
atcaaaaccattccggtcagtaatgagcaaatgagaacggtcgatgatctgctcatcgaa
tacgaggaagctgatataaaaatcacgaatttggctctgatttgcaccgcgcgtggactc
gtcgactattttaatgtcactttgggctaccaactgctctataagttcgagcggccacag
tacaatgaccttgtcaaaaagcgagctatggagaagggaatcgacatcacaaacccgacc
gccctgcaggatagtggattccgtccatctcaagagtacggaattgtgcatttcttgaga
atgctcgcaaagctcccggactacctgaagctcactcaatggaatgatcatgttattaac
cgcatcatgattggagttcacgatttgattgtgttcctgaataagaatcacgggaagtac
tacagaggatcgtctgattatcaaggtgcctccaacgactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTCGAGCTTCCGAAGCCACTGA 707 155 391 Antisense
GATCTTGTCTGCCGTTATTTCATAA 83 421 439 Antisense
GTGCCACACGAGTATTCAGTTGATC 97 479 469 Antisense
ACGAATTTGGCTCTGATTTGCACCG 554 91 595 Antisense
CGCGTGGACTCGTCGACTATTTTAA 417 255 620 Antisense
TTTGGGCTACCAACTGCTCTATAAG 368 665 651 Antisense
GTTCGAGCGGCCACAGTACAATGAC 49 443 675 Antisense
CGACCGCCCTGCAGGATAGTGGATT 495 251 746 Antisense
GATAGTGGATTCCGTCCATCTCAAG 122 425 760 Antisense
GACTACCTGAAGCTCACTCAATGGA 215 373 829 Antisense
TTATCAAGGTGCCTCCAACGACTAC 551 669 948 Antisense
Sequence Source Affymetrix Proprietary Database