[Home] | [Total List]

[179897_s_at]

Description R11E3.7 /REP_DB=WormBase Gene ID /WP=CE19549 /TR=Q9TYX2 /GB=AAK39269.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 391.7
(3)
P 		215.5
(-0.8)
P 		110.6
(-3)
P 		335
(1.8)
P 		281
B 339.5
(3)
P 		219.8
(-1.2)
P 		167.3
(-3)
P 		214.6
(-1.4)
P 		172
C 399.5
(3)
P 		173.4
(-3)
P 		188.9
(-2.6)
P 		266.2
(-0.5)
P 		226
avr 376.9
(3) 		202.9
(-1.7) 		155.6
(-3) 		271.9
(0.2) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 265.6
(-2.4)
P 		333.6
(1.7)
P 		256
(-3)
P 		298.1
(-0.4)
P 		354.9
(3)
P 		325.9
(1.2)
P 		99
B 378.2
(3)
P 		340.3
(0.7)
P 		280.7
(-3)
P 		334.2
(0.3)
P 		345.5
(1)
P 		362.4
(2)
P 		98
C 267
(-3)
P 		383.9
(3)
P 		291.8
(-1.7)
P 		333.5
(0.4)
P 		266.8
(-3)
P 		357.8
(1.7)
P 		117
avr 303.6
(-0.8) 		352.6
(3) 		276.2
(-3) 		321.9
(0.6) 		322.4
(0.6) 		348.7
(2.7) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 142.6
(3)
P 		46.8
(-2.1)
P 		28.9
(-3)
P 		49
(-1.9)
P 		114
B 108.3
(3)
P 		54.3
(-1.7)
P 		38.8
(-3)
P 		45.7
(-2.4)
P 		70
C 132.3
(3)
P 		49.9
(-2.7)
P 		65.9
(-1.6)
P 		44.9
(-3)
P 		87
avr 127.7
(3) 		50.3
(-2.6) 		44.5
(-3) 		46.5
(-2.9) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 49
(-3)
P 		118.6
(3)
P 		55.7
(-2.4)
P 		75.6
(-0.7)
P 		107.1
(2)
P 		79.3
(-0.4)
P 		70
B 131.6
(2.3)
P 		113.3
(0.7)
P 		68.2
(-3)
P 		88.5
(-1.3)
P 		140.4
(3)
P 		135.2
(2.6)
P 		72
C 99
(0.6)
P 		117.1
(2.7)
P 		74.3
(-2.2)
P 		67.1
(-3)
P 		86.3
(-0.8)
P 		119.8
(3)
P 		53
avr 93.2
(0.2) 		116.3
(3) 		66.1
(-3) 		77.1
(-1.7) 		111.3
(2.4) 		111.4
(2.4) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179897_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10619
Sequence Type Exemplar sequence
Representative Public ID R11E3.7 NCBI
Target Description R11E3.7 /REP_DB=WormBase Gene ID /WP=CE19549 /TR=Q9TYX2 /GB=AAK39269.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171328 NCBI Caenorhabditis elegans Dipeptidyl Peptidase Four (IV) family member (dpf-7) (dpf-7) mRNA, complete cds. 11/11 None
SNAP00000009830 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4799590:4806582:-1 11/11 None
GENEFINDER00000009850 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4799590:4802538:-1 11/11 None
R11E3.7a ENSEMBL cdna:known chromosome:CEL140:IV:4799390:4802582:-1 gene:R11E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177250 2 1 NM_171328 179897_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4799595-4802544(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11E3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39269 Dipeptidyl peptidase four (iv) family protein 7, isoform a [Caenorhabditis elegans] ref|NP_741386.1| Dipeptidyl Peptidase Four (IV) family member (dpf-7) [Caenorhabditis elegans] 0.0
blast T33751 hypothetical protein R11E3.8 - Caenorhabditis elegans 0.0
blast AAK39270 Dipeptidyl peptidase four (iv) family protein 5 [Caenorhabditis elegans] ref|NP_500647.2| Dipeptidyl Peptidase Four (IV) family member (dpf-5) [Caenorhabditis elegans] 0.0
blast CAE66386 Hypothetical protein CBG11648 [Caenorhabditis briggsae] 1.0E-109
blast CAE66386 Hypothetical protein CBG11648 [Caenorhabditis briggsae] 1.0E-104
blast AAM97938 Dipeptidyl peptidase four (iv) family protein 7, isoform b [Caenorhabditis elegans] ref|NP_741387.1| Dipeptidyl Peptidase Four (IV) family member (dpf-7) [Caenorhabditis elegans] 1.0E-69
Sequence
Target Sequence 
>C. ELEGANS:179897_S_AT
accctgtgctctctacaatggtaacttgtggcttctgtgtgctagttgtaaactatcggg
agccatttatagcaattccaggaacctgctttccaaagaattgtggttcggaatgtatta
atgatgttcatgaaactgtactagaagttctcgagagacacggagcgcggttagatgaaa
aatatatttacttgtatggatttgaatttggatcttttgtggcgtgtagtctgattatca
aacataagaaattctataaaggatgtgcactcgtacggccgatgctcgaatttccattca
caacgtgtgcagttgatacagaaaaccctgaagctgaatttctgaaagacgtggagccgg
tctcacatgcgtctgaaattgttactccgatgttgattgttctggagaataaaagcgata
caaagtacaaagattttgagtctacaattcacaataatggcgttccgtgttttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCTGTGCTCTCTACAATGGTAAC 269 91 1232 Antisense
GGTAACTTGTGGCTTCTGTGTGCTA 537 503 1251 Antisense
GCAATTCCAGGAACCTGCTTTCCAA 372 323 1303 Antisense
GAGAGACACGGAGCGCGGTTAGATG 82 395 1384 Antisense
GGATCTTTTGTGGCGTGTAGTCTGA 660 509 1441 Antisense
ATAAAGGATGTGCACTCGTACGGCC 687 1 1487 Antisense
GCCGATGCTCGAATTTCCATTCACA 4 285 1509 Antisense
TGAAAGACGTGGAGCCGGTCTCACA 120 573 1574 Antisense
CATGCGTCTGAAATTGTTACTCCGA 457 211 1597 Antisense
GTTACTCCGATGTTGATTGTTCTGG 167 447 1612 Antisense
ACAATAATGGCGTTCCGTGTTTTGG 499 111 1682 Antisense
Sequence Source Affymetrix Proprietary Database