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[179895_at]

Description K05F6.9 /REP_DB=WormBase Gene ID /WP=CE17167 /TR=O44869 /GB=AAB95030.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 42.9
(-0.9)
A 		29
(-3)
A 		67.9
(3)
M 		61.5
(2)
A 		39
B 53.8
(-1.9)
A 		86.5
(3)
P 		46.3
(-3)
A 		60.2
(-0.9)
A 		40
C 27.2
(-3)
A 		67.2
(3)
A 		28.5
(-2.8)
A 		47.1
(-0)
A 		40
avr 41.3
(-3) 		60.9
(3) 		47.6
(-1.1) 		56.3
(1.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 36.4
(-1)
A 		21.9
(-2.7)
A 		19.1
(-3)
A 		43.3
(-0.3)
A 		72.1
(3)
P 		58.6
(1.5)
P 		53
B 51.7
(1.5)
A 		31.8
(-3)
A 		56.7
(2.6)
A 		43.9
(-0.3)
A 		51.6
(1.5)
P 		58.3
(3)
P 		27
C 53.8
(1.4)
A 		46
(0)
A 		34.7
(-2)
A 		54.3
(1.5)
A 		29.2
(-3)
P 		62.5
(3)
P 		33
avr 47.3
(0.2) 		33.2
(-3) 		36.8
(-2.2) 		47.2
(0.2) 		51
(1) 		59.8
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.6
(1.9)
A 		6.3
(-3)
A 		17.7
(3)
M 		9
(-1.6)
A 		11
B 17.2
(0.6)
A 		21.4
(3)
P 		10.7
(-3)
A 		12.8
(-1.8)
A 		11
C 9
(-2.4)
A 		19.3
(3)
A 		9.9
(-1.9)
A 		7.9
(-3)
A 		11
avr 13.9
(1.1) 		15.7
(3) 		12.8
(0) 		9.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.7
(-2.1)
A 		7.8
(-1.8)
A 		4.2
(-3)
A 		11
(-0.7)
A 		21.8
(3)
P 		14.3
(0.4)
P 		18
B 18
(1)
A 		10.6
(-3)
A 		13.8
(-1.3)
A 		11.6
(-2.5)
A 		21
(2.6)
P 		21.7
(3)
P 		11
C 19.9
(2.5)
A 		14
(-0.4)
A 		8.8
(-3)
A 		10.9
(-2)
A 		9.4
(-2.7)
P 		20.9
(3)
P 		12
avr 14.9
(0.6) 		10.8
(-1.9) 		8.9
(-3) 		11.2
(-1.6) 		17.4
(2) 		19
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5947
Sequence Type Exemplar sequence
Representative Public ID K05F6.9 NCBI
Target Description K05F6.9 /REP_DB=WormBase Gene ID /WP=CE17167 /TR=O44869 /GB=AAB95030.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061598 NCBI Caenorhabditis elegans K05F6.9 (K05F6.9) mRNA, complete cds. 11/11 None
SNAP00000019323 ENSEMBL cdna:SNAP chromosome:CEL140:II:1570088:1570927:-1 11/11 None
GENEFINDER00000019335 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1570088:1571133:-1 11/11 None
K05F6.9 ENSEMBL cdna:known chromosome:CEL140:II:1570088:1571133:-1 gene:K05F6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1570086-1571132(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.9
Entrez Gene 187038 Entrez gene
SwissProt O44869 EMBL-EBI
WormBase CE17167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 1.0E-180
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 1.0E-150
blast AAK84545 Hypothetical protein M01D1.10 [Caenorhabditis elegans] ref|NP_493897.1| M01D1.10 [Caenorhabditis elegans] 2.0E-58
blast AAB95024 Hypothetical protein K05F6.4 [Caenorhabditis elegans] ref|NP_493992.1| K05F6.4 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-4
Sequence
Target Sequence 
>C. ELEGANS:179895_AT
ttccaaagctcatcggtgcatttcaaccgcaaaacttgctcagtttacgttcgtatccaa
gaccaccatttgactcctcccaaaagtctgaactacgtcaaattttgtcccagcagtttc
aaacctttattttggaagttgacataccgttgaaagaactacttcacacaaactgctcat
acgtttacctttccagttcattgctaacagataaggatattaacgtgttcttgaaacatt
ggttggcaggtttgaagccaaagcttgaatttctttggcttgtaagaagtgcccaagttt
tcaatccaactacgattctcgaaggaataccacatgaagttgcaccaaatgacagggaat
tgaaattgcattataatatgctaaccaaagtcggaggagtcgacatcgacctgggtggag
gca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAAAGCTCATCGGTGCATTTCA 596 699 506 Antisense
GGTGCATTTCAACCGCAAAACTTGC 122 501 520 Antisense
ACTTGCTCAGTTTACGTTCGTATCC 619 103 539 Antisense
GTATCCAAGACCACCATTTGACTCC 103 453 558 Antisense
ACTCCTCCCAAAAGTCTGAACTACG 323 97 578 Antisense
GTCAAATTTTGTCCCAGCAGTTTCA 169 465 602 Antisense
ACTGCTCATACGTTTACCTTTCCAG 586 97 677 Antisense
TACCTTTCCAGTTCATTGCTAACAG 696 645 691 Antisense
GAAGTGCCCAAGTTTTCAATCCAAC 362 335 791 Antisense
GGAATACCACATGAAGTTGCACCAA 440 533 829 Antisense
GTCGACATCGACCTGGGTGGAGGCA 28 475 904 Antisense
Sequence Source Affymetrix Proprietary Database