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[179894_at]

Description F47B10.9 /REP_DB=WormBase Gene ID /WP=CE03359 /TR=Q20509 /GB=CAA91989.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 94      6grp_total > 84      4grp_total > 43      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 243.8
(-2.3)
P 		443.9
(3)
P 		218
(-3)
P 		346.7
(0.4)
P 		226
B 245.1
(-3)
P 		467
(3)
P 		261.9
(-2.5)
P 		266.7
(-2.4)
P 		222
C 261.9
(-2.6)
P 		470.1
(3)
P 		320.9
(-1)
P 		246.7
(-3)
P 		223
avr 250.3
(-3) 		460.3
(3) 		266.9
(-2.5) 		286.7
(-2) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 797
1 2 3 4 5 6 range
A 337.5
(-2.4)
P 		269.2
(-3)
P 		366.5
(-2.2)
P 		723.3
(0.7)
P 		998.5
(3)
P 		785.8
(1.3)
P 		729
B 249.3
(-3)
P 		257.5
(-2.9)
P 		352.3
(-2.2)
P 		877.2
(2.2)
P 		980.8
(3)
P 		734.9
(1)
P 		732
C 201.8
(-3)
P 		338.2
(-1.7)
P 		319.7
(-1.9)
P 		847.6
(3)
P 		782.6
(2.4)
P 		796.7
(2.5)
P 		646
avr 262.9
(-3) 		288.3
(-2.8) 		346.2
(-2.2) 		816
(2) 		920.6
(3) 		772.5
(1.6) 		658
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 88.8
(2)
P 		96.3
(3)
P 		57
(-2.2)
P 		50.8
(-3)
P 		46
B 78.2
(-0.8)
P 		115.3
(3)
P 		60.7
(-2.6)
P 		56.8
(-3)
P 		59
C 86.7
(-0.1)
P 		135.2
(3)
P 		111.8
(1.5)
P 		41.6
(-3)
P 		94
avr 84.6
(0.2) 		115.6
(3) 		76.5
(-0.6) 		49.7
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 62.2
(-3)
P 		95.7
(-2.2)
P 		79.8
(-2.6)
P 		183.4
(0)
P 		301.3
(3)
P 		191.3
(0.2)
P 		239
B 86.8
(-3)
P 		85.7
(-3)
P 		85.5
(-3)
P 		232.3
(-0.2)
P 		398.5
(3)
P 		274
(0.6)
P 		313
C 74.8
(-3)
P 		103.2
(-2.1)
P 		81.4
(-2.8)
P 		170.5
(-0)
P 		253.2
(2.6)
P 		266.7
(3)
P 		192
avr 74.6
(-3) 		94.9
(-2.5) 		82.2
(-2.8) 		195.4
(-0) 		317.7
(3) 		244
(1.2) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16835
Sequence Type Exemplar sequence
Representative Public ID F47B10.9 NCBI
Target Description F47B10.9 /REP_DB=WormBase Gene ID /WP=CE03359 /TR=Q20509 /GB=CAA91989.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077423 NCBI Caenorhabditis elegans F47B10.9 (F47B10.9) mRNA, complete cds. 11/11 None
SNAP00000040451 ENSEMBL cdna:SNAP chromosome:CEL140:X:10912351:10913998:-1 11/11 None
GENEFINDER00000040454 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10912351:10914004:-1 11/11 None
F47B10.9 ENSEMBL cdna:known chromosome:CEL140:X:10912351:10913998:-1 gene:F47B10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10912350-10913998(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B10.9
Entrez Gene 185906 Entrez gene
SwissProt Q20509 EMBL-EBI
WormBase CE03359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91989 Hypothetical protein F47B10.9 [Caenorhabditis elegans] ref|NP_509824.1| F47B10.9 [Caenorhabditis elegans] 1.0E-122
blast CAA91989 Hypothetical protein F47B10.9 [Caenorhabditis elegans] ref|NP_509824.1| F47B10.9 [Caenorhabditis elegans] 1.0E-119
blast CAA91989 Hypothetical protein F47B10.9 [Caenorhabditis elegans] ref|NP_509824.1| F47B10.9 [Caenorhabditis elegans] 1.0E-114
blast CAE70795 Hypothetical protein CBG17553 [Caenorhabditis briggsae] 3.0E-85
blast CAE70795 Hypothetical protein CBG17553 [Caenorhabditis briggsae] 7.0E-82
blast CAE70795 Hypothetical protein CBG17553 [Caenorhabditis briggsae] 3.0E-80
blast AAC17009 Hypothetical protein F56C3.9 [Caenorhabditis elegans] ref|NP_508258.1| F56C3.9 [Caenorhabditis elegans] 1.0E-74
Sequence
Target Sequence 
>C. ELEGANS:179894_AT
ttttctactgagaccgtcctacgaaagtttcaaatcgacacacaatctgacacactttat
gtaaacctcagctatttggccgaactgtcagagtattttcatattttgcgcacaggttca
tacaccgaaaaaacatccgaaaaagtaactcttgatgatgtatacacagatgaacttgtg
gtgttcctatcatacgtgtgcccggaaggatttgaatttgaccgcactatcaatcaacaa
aacatcacgcctcttgtttacttctcggatcgtctcatcttcccatgggttaagcaagaa
atcaagaaatatttcaaaagcgatgacttcaaaaatgagttgtacgatgcggagtcgttg
attcagctttgctaccttcttcacacgcagtgctacgctagcggtgatattgatccaatt
ttcaagaagattgcacggctcgaaaacatctcgttggttgataaagcagtagccgctatt
tcagatgccaacatgcgcagttattttgccgagagaatcattcatttcagaccatactcc
tatcaaccaagagcccaatcgtttttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTACTGAGACCGTCCTACGAA 257 675 67 Antisense
ACCTCAGCTATTTGGCCGAACTGTC 667 83 131 Antisense
ACTTGTGGTGTTCCTATCATACGTG 123 105 240 Antisense
AAACATCACGCCTCTTGTTTACTTC 79 129 306 Antisense
TCGTCTCATCTTCCCATGGGTTAAG 114 605 336 Antisense
TTGATTCAGCTTTGCTACCTTCTTC 311 707 424 Antisense
CTTCACACGCAGTGCTACGCTAGCG 94 221 445 Antisense
GCACGGCTCGAAAACATCTCGTTGG 445 309 499 Antisense
GTAGCCGCTATTTCAGATGCCAACA 492 457 535 Antisense
ATTCATTTCAGACCATACTCCTATC 648 11 586 Antisense
ACCAAGAGCCCAATCGTTTTTCGAT 576 83 612 Antisense
Sequence Source Affymetrix Proprietary Database