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[179893_s_at]

Description K06A5.2 /REP_DB=WormBase Gene ID /WP=CE11770 /TR=O44551 /GB=AAK21430.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 4
(-3)
A 		27.3
(1.1)
A 		38.5
(3)
A 		12.8
(-1.5)
A 		35
B 7.3
(-0.2)
A 		13.3
(3)
A 		4.2
(-1.9)
A 		2.2
(-3)
A 		11
C 17.4
(-3)
A 		24.6
(-1.9)
A 		26.4
(-1.6)
A 		55
(3)
A 		38
avr 9.6
(-3) 		21.7
(2.3) 		23
(2.9) 		23.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1049
1 2 3 4 5 6 range
A 18.2
(-2.9)
A 		13.7
(-2.9)
A 		3.8
(-3)
A 		75.9
(-2.6)
A 		440
(-0.4)
P 		1025.5
(3)
P 		1022
B 4.1
(-3)
A 		1.5
(-3)
A 		25
(-2.8)
A 		78.8
(-2.5)
A 		452.7
(-0)
P 		904.4
(3)
P 		903
C 6.6
(-3)
A 		4.9
(-3)
A 		6.2
(-3)
A 		8.3
(-3)
A 		444
(-0.5)
P 		1050.2
(3)
P 		1045
avr 9.6
(-3) 		6.7
(-3) 		11.7
(-3) 		54.3
(-2.7) 		445.6
(-0.3) 		993.4
(3) 		987
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-3)
A 		5.9
(0.1)
A 		10.1
(3)
A 		1.9
(-2.7)
A 		9
B 2.3
(0.9)
A 		3.3
(3)
A 		1
(-1.9)
A 		0.5
(-3)
A 		3
C 5.8
(-3)
A 		7.1
(-0.8)
A 		9.2
(2.8)
A 		9.3
(3)
A 		4
avr 3.2
(-3) 		5.4
(0.7) 		6.8
(3) 		3.9
(-1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		4.9
(-2.9)
A 		0.8
(-3)
A 		19.2
(-2.6)
A 		132.8
(0.2)
P 		249.7
(3)
P 		249
B 1.4
(-3)
A 		0.5
(-3)
A 		6.1
(-2.9)
A 		20.9
(-2.6)
A 		183.9
(0.3)
P 		337.2
(3)
P 		337
C 2.4
(-3)
A 		1.5
(-3)
A 		1.6
(-3)
A 		1.7
(-3)
A 		143.7
(-0.6)
P 		351.6
(3)
P 		350
avr 2.4
(-3) 		2.3
(-3) 		2.8
(-3) 		13.9
(-2.8) 		153.5
(-0.1) 		312.8
(3) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179893_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.760
Sequence Type Exemplar sequence
Representative Public ID K06A5.2 NCBI
Target Description K06A5.2 /REP_DB=WormBase Gene ID /WP=CE11770 /TR=O44551 /GB=AAK21430.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059460 NCBI Caenorhabditis elegans K06A5.2 (K06A5.2) mRNA, complete cds. 11/11 A 
SNAP00000044599 ENSEMBL cdna:SNAP chromosome:CEL140:I:6476317:6477491:1 11/11 None
GENEFINDER00000044613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6476317:6477491:1 11/11 None
K06A5.2 ENSEMBL cdna:known chromosome:CEL140:I:6476276:6477491:1 gene:K06A5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6476245-6477420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A5.2
Entrez Gene 259316 Entrez gene
SwissProt O44551 EMBL-EBI
WormBase CE11770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21430 Hypothetical protein K06A5.2 [Caenorhabditis elegans] ref|NP_491861.1| K06A5.2 [Caenorhabditis elegans] 1.0E-168
blast CAE67199 Hypothetical protein CBG12635 [Caenorhabditis briggsae] 1.0E-119
blast CAE64563 Hypothetical protein CBG09313 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR008574 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF856 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491861.1 5 120-142,146-168,181-203,253-272,284-306
K06A5.2 5 120-142,146-168,181-203,253-272,284-306
SNAP00000044599 5 120-142,146-168,181-203,253-272,284-306
GENEFINDER00000044613 5 120-142,146-168,181-203,253-272,284-306
Sequence
Target Sequence 
>C. ELEGANS:179893_S_AT
tgtggccacctcaattctgattcactccacacttggagctgttgaaggagcattgacacc
tgtttattttgtactgactggattctacactcttgccgctttgattcccattcaattggc
tagtcgtgatcagagccgtgcaaatgtgaacttgtattctgccattctcgttggtctcac
catctctgcaaagtgcttggtttacggtgttcttggagcatatgacgtgccaatctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGCCACCTCAATTCTGATTCAC 303 555 717 Antisense
GATTCACTCCACACTTGGAGCTGTT 238 431 735 Antisense
GAAGGAGCATTGACACCTGTTTATT 199 335 760 Antisense
CACCTGTTTATTTTGTACTGACTGG 270 201 773 Antisense
ACTGACTGGATTCTACACTCTTGCC 67 99 789 Antisense
GATTCCCATTCAATTGGCTAGTCGT 17 433 819 Antisense
CTAGTCGTGATCAGAGCCGTGCAAA 698 223 836 Antisense
AATGTGAACTTGTATTCTGCCATTC 662 163 859 Antisense
GTCTCACCATCTCTGCAAAGTGCTT 610 469 890 Antisense
GTGCTTGGTTTACGGTGTTCTTGGA 267 481 909 Antisense
GAGCATATGACGTGCCAATCTCTGC 678 387 932 Antisense
Sequence Source Affymetrix Proprietary Database