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[179892_at]

Description K06A5.2 /REP_DB=WormBase Gene ID /WP=CE11770 /TR=O44551 /GB=AAK21430.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 46.9
(-2.9)
A 		45.7
(-3)
A 		79.5
(0.9)
A 		97.4
(3)
M 		52
B 56
(-1.2)
A 		62.8
(-0.4)
A 		40.9
(-3)
A 		91.3
(3)
M 		50
C 48.7
(-2.3)
A 		68.9
(-1.1)
A 		35.7
(-3)
A 		140.1
(3)
P 		104
avr 50.5
(-3) 		59.1
(-2.1) 		52
(-2.8) 		109.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 20.7
(-3)
A 		52.8
(-2.6)
A 		54.6
(-2.6)
A 		76.4
(-2.3)
P 		310.9
(0.7)
P 		488
(3)
P 		467
B 77.2
(-2.6)
M 		59.2
(-3)
A 		71.2
(-2.8)
A 		98.3
(-2.2)
A 		291
(1.5)
P 		366
(3)
P 		307
C 54.2
(-3)
A 		66.1
(-2.7)
A 		52.4
(-3)
A 		93.4
(-2.2)
A 		320.2
(2.2)
P 		361.4
(3)
P 		309
avr 50.7
(-3) 		59.4
(-2.9) 		59.4
(-2.9) 		89.4
(-2.3) 		307.4
(1.3) 		405.1
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 17.1
(1)
A 		9.9
(-3)
A 		20.8
(3)
A 		14.3
(-0.6)
M 		11
B 17.9
(2)
A 		15.5
(0.6)
A 		9.5
(-3)
A 		19.5
(3)
M 		10
C 16.1
(-1.1)
A 		19.8
(0.9)
A 		12.5
(-3)
A 		23.6
(3)
P 		11
avr 17
(0.4) 		15.1
(-2) 		14.3
(-3) 		19.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 3.8
(-3)
A 		18.8
(-2.2)
A 		11.9
(-2.6)
A 		19.4
(-2.2)
P 		93.8
(1.7)
P 		118.8
(3)
P 		115
B 26.9
(-2.5)
M 		19.7
(-2.9)
A 		17.3
(-3)
A 		26
(-2.6)
A 		118.2
(2.1)
P 		136.5
(3)
P 		119
C 20.1
(-2.6)
A 		20.2
(-2.6)
A 		13.3
(-3)
A 		18.8
(-2.7)
A 		103.6
(2)
P 		121
(3)
P 		108
avr 16.9
(-2.9) 		19.6
(-2.7) 		14.2
(-3) 		21.4
(-2.6) 		105.2
(1.9) 		125.4
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.760
Sequence Type Exemplar sequence
Representative Public ID K06A5.2 NCBI
Target Description K06A5.2 /REP_DB=WormBase Gene ID /WP=CE11770 /TR=O44551 /GB=AAK21430.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059460 NCBI Caenorhabditis elegans K06A5.2 (K06A5.2) mRNA, complete cds. 11/11 A 
SNAP00000044599 ENSEMBL cdna:SNAP chromosome:CEL140:I:6476317:6477491:1 11/11 None
GENEFINDER00000044613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6476317:6477491:1 11/11 None
K06A5.2 ENSEMBL cdna:known chromosome:CEL140:I:6476276:6477491:1 gene:K06A5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6476245-6477420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A5.2
Entrez Gene 259316 Entrez gene
SwissProt O44551 EMBL-EBI
WormBase CE11770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21430 Hypothetical protein K06A5.2 [Caenorhabditis elegans] ref|NP_491861.1| K06A5.2 [Caenorhabditis elegans] 1.0E-168
blast CAE67199 Hypothetical protein CBG12635 [Caenorhabditis briggsae] 1.0E-119
blast CAE64563 Hypothetical protein CBG09313 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR008574 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF856 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491861.1 5 120-142,146-168,181-203,253-272,284-306
K06A5.2 5 120-142,146-168,181-203,253-272,284-306
SNAP00000044599 5 120-142,146-168,181-203,253-272,284-306
GENEFINDER00000044613 5 120-142,146-168,181-203,253-272,284-306
Sequence
Target Sequence 
>C. ELEGANS:179892_AT
taatcttgactgtcttctcgttgtcctcattgctcggtggatacattcttgctccattca
tctcctttctcattcctcctgttggagctgctattttcagtggacttgttgcaccattgg
ctatctactatcagctgagcacgggttacggccctctaaatggattccggcttttggtta
ttgcaacaactgtacagggagttctcactggatccgcattgtcacacgtcttgatttcgg
ctgaaccattcgttgccctttctactattgcatcctcgttcattattgcagtgatgaacc
cgacttctcgggcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTTGACTGTCTTCTCGTTGTC 480 635 386 Antisense
TTGCTCGGTGGATACATTCTTGCTC 554 701 415 Antisense
CTCATTCCTCCTGTTGGAGCTGCTA 491 229 454 Antisense
TGCACCATTGGCTATCTACTATCAG 472 577 495 Antisense
TATCAGCTGAGCACGGGTTACGGCC 223 659 514 Antisense
ACGGCCCTCTAAATGGATTCCGGCT 659 95 533 Antisense
TACAGGGAGTTCTCACTGGATCCGC 259 643 578 Antisense
TTGTCACACGTCTTGATTTCGGCTG 611 703 604 Antisense
ATTTCGGCTGAACCATTCGTTGCCC 626 15 619 Antisense
CTACTATTGCATCCTCGTTCATTAT 126 227 647 Antisense
GATGAACCCGACTTCTCGGGCATCT 279 411 678 Antisense
Sequence Source Affymetrix Proprietary Database