[Home] | [Total List]

[179891_s_at]

Description T07D3.9 /REP_DB=WormBase Gene ID /WP=CE13371 /TR=O16725 /GB=AAB66189.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 98.7
(0.5)
P 		89.3
(0.2)
A 		165.1
(3)
P 		4.3
(-3)
A 		161
B 99.6
(-0.2)
A 		73
(-1.3)
A 		176.5
(3)
P 		32.7
(-3)
A 		144
C 91.3
(0.6)
P 		82.1
(0.1)
A 		134.5
(3)
A 		26.2
(-3)
A 		108
avr 96.5
(0.3) 		81.5
(-0.4) 		158.7
(3) 		21.1
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 127.7
(1.1)
P 		33.6
(-2.4)
A 		50.6
(-1.8)
A 		18.7
(-3)
A 		85.9
(-0.5)
A 		180.1
(3)
A 		161
B 99.8
(2.7)
A 		43
(-2.1)
A 		32.1
(-3)
A 		41.5
(-2.2)
A 		99.5
(2.7)
P 		103.4
(3)
M 		71
C 103.5
(-0.1)
A 		50.4
(-3)
A 		60.3
(-2.5)
A 		70
(-1.9)
A 		70
(-1.9)
A 		161.2
(3)
P 		111
avr 110.3
(0.9) 		42.3
(-3) 		47.7
(-2.7) 		43.4
(-2.9) 		85.1
(-0.6) 		148.2
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 35.9
(2)
P 		19.4
(-0.4)
A 		43.2
(3)
P 		0.6
(-3)
A 		43
B 31.8
(1.4)
A 		18
(-1.1)
A 		40.9
(3)
P 		7
(-3)
A 		34
C 30.2
(0.6)
P 		23.6
(-0.3)
A 		46.9
(3)
A 		4.4
(-3)
A 		43
avr 32.6
(1.3) 		20.3
(-0.5) 		43.7
(3) 		4
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 23.5
(-0.1)
P 		12
(-1.9)
A 		11
(-2)
A 		4.7
(-3)
A 		25.9
(0.2)
A 		43.9
(3)
A 		39
B 34.7
(2)
A 		14.3
(-1.8)
A 		7.8
(-3)
A 		11
(-2.4)
A 		40.4
(3)
P 		38.6
(2.7)
M 		33
C 38.4
(0.7)
A 		15.4
(-2.8)
A 		15.3
(-2.8)
A 		14.1
(-3)
A 		22.6
(-1.7)
A 		54
(3)
P 		40
avr 32.2
(0.8) 		13.9
(-2.3) 		11.4
(-2.7) 		9.9
(-3) 		29.6
(0.3) 		45.5
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179891_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5696
Sequence Type Exemplar sequence
Representative Public ID T07D3.9 NCBI
Target Description T07D3.9 /REP_DB=WormBase Gene ID /WP=CE13371 /TR=O16725 /GB=AAB66189.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182190(11), NM_061442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182190 NCBI Caenorhabditis elegans T07D3.9b (T07D3.9) mRNA, complete cds. 11/11 A 
NM_061442 NCBI Caenorhabditis elegans T07D3.9a (T07D3.9) mRNA, complete cds. 11/11 A 
SNAP00000029311 ENSEMBL cdna:SNAP chromosome:CEL140:II:898202:900734:-1 11/11 None
GENEFINDER00000029313 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:898182:900734:-1 11/11 None
T07D3.9b ENSEMBL cdna:known chromosome:CEL140:II:898065:900741:-1 gene:T07D3.9 11/11 A 
T07D3.9a.3 ENSEMBL cdna:known chromosome:CEL140:II:898074:900747:-1 gene:T07D3.9 11/11 None
T07D3.9a.2 ENSEMBL cdna:known chromosome:CEL140:II:898074:900743:-1 gene:T07D3.9 11/11 None
T07D3.9a.1 ENSEMBL cdna:known chromosome:CEL140:II:898074:900741:-1 gene:T07D3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:898200-900733(-) 100.0 100.0
Public Domain and Genome References
Ensembl T07D3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38605 Hypothetical protein T07D3.9b [Caenorhabditis elegans] ref|NP_871990.1| T07D3.9b [Caenorhabditis elegans] 0.0
blast AAB66189 Hypothetical protein T07D3.9a [Caenorhabditis elegans] ref|NP_493843.2| T07D3.9a [Caenorhabditis elegans] 0.0
blast CAE62947 Hypothetical protein CBG07159 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.7E-9
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.7E-9
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:179891_S_AT
ggagcactttaggcggatgggcagctcgacgaacaagcagccgacaaatgaggagtttca
agtgattcacaacatgtatagtgagctcgttggcagaagcatggtgcacgatgtggcgaa
cactgaaatgtggatgcacaagacaaacctctcggtcactgaaatctgcttcccagaata
ccaaaacatgtacggaaagattttcggcggtttcttgatgcgaaaagccttggagctggc
tcacacgaacgccaagctctactgcaaaggtcgtgttgccatccgatccatggatcagat
tgagttccagaagcctgtggaaattgggcatgtcctgcactttgactcattcgtcacata
caccgatggaaaatatgtgcaggtgaaggtagcggcgacgatttcggatcagcacaagct
ccccgagctcgccaagttgaatcatccgacgctcggtgaagaggctcgcgtcaacacaaa
tgtgttcaacttcacgatggaaagcgtcgagaatccgaatgtgctccgtgtggttccaaa
gcactatgtgcacaccacaagctacctggaaggacgtcggctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCACTTTAGGCGGATGGGCAGC 182 521 720 Antisense
GCAGCTCGACGAACAAGCAGCCGAC 367 313 740 Antisense
GCATGGTGCACGATGTGGCGAACAC 262 311 818 Antisense
ACAAGACAAACCTCTCGGTCACTGA 487 111 857 Antisense
GGTCACTGAAATCTGCTTCCCAGAA 138 503 873 Antisense
GATTTTCGGCGGTTTCTTGATGCGA 339 429 918 Antisense
AAAAGCCTTGGAGCTGGCTCACACG 558 131 942 Antisense
TGTTGCCATCCGATCCATGGATCAG 442 561 993 Antisense
GCTCCGTGTGGTTCCAAAGCACTAT 203 299 1242 Antisense
CTATGTGCACACCACAAGCTACCTG 476 223 1263 Antisense
AGCTACCTGGAAGGACGTCGGCTGC 692 77 1279 Antisense
Sequence Source Affymetrix Proprietary Database