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[179890_at]

Description F59H6.2 /REP_DB=WormBase Gene ID /WP=CE20908 /TR=Q9N5Q3 /GB=AAF39853.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 08      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.4
(-3)
A 		19.4
(-1.4)
A 		36.1
(0.3)
A 		61.7
(3)
A 		57
B 2.7
(-3)
A 		5.3
(-2.3)
A 		3.3
(-2.8)
A 		26.1
(3)
A 		23
C 22.4
(-0.6)
A 		3
(-3)
A 		11.7
(-1.9)
A 		51.7
(3)
A 		49
avr 9.8
(-2.9) 		9.2
(-3) 		17
(-1.7) 		46.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.2
(-3)
A 		17.9
(3)
A 		13.8
(1.3)
A 		5.7
(-2)
A 		7.5
(-1.2)
A 		9.9
(-0.3)
A 		15
B 4.7
(-3)
A 		18.2
(1.1)
A 		19
(1.4)
A 		24.3
(3)
A 		6.9
(-2.3)
A 		9.5
(-1.5)
A 		20
C 4
(-2.9)
A 		3.1
(-3)
A 		3.4
(-3)
A 		47.1
(3)
A 		3.3
(-3)
A 		20.2
(-0.7)
A 		44
avr 4
(-3) 		13.1
(-0.5) 		12.1
(-0.8) 		25.7
(3) 		5.9
(-2.5) 		13.2
(-0.5) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-3)
A 		4.2
(-1)
A 		9.4
(3)
A 		9
(2.7)
A 		8
B 0.9
(-2.9)
A 		1.3
(-2.4)
A 		0.8
(-3)
A 		5.6
(3)
A 		5
C 7.4
(2)
A 		0.9
(-3)
A 		4.1
(-0.5)
A 		8.7
(3)
A 		8
avr 3.3
(-1.7) 		2.1
(-3) 		4.8
(-0.2) 		7.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.4
(3)
A 		3
(-0.5)
A 		1.5
(-2.1)
A 		2.3
(-1.2)
A 		2.4
(-1.1)
A 		6
B 1.6
(-3)
A 		6.1
(2.6)
A 		4.6
(0.7)
A 		6.4
(3)
A 		2.8
(-1.5)
A 		3.5
(-0.6)
A 		5
C 1.5
(-2.6)
A 		1
(-2.9)
A 		0.9
(-3)
A 		9.5
(3)
A 		1.1
(-2.9)
A 		6.8
(1.1)
A 		9
avr 1.2
(-3) 		4.5
(1.3) 		2.8
(-0.9) 		5.8
(3) 		2.1
(-1.8) 		4.2
(0.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5694
Sequence Type Exemplar sequence
Representative Public ID F59H6.2 NCBI
Target Description F59H6.2 /REP_DB=WormBase Gene ID /WP=CE20908 /TR=Q9N5Q3 /GB=AAF39853.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061752 NCBI Caenorhabditis elegans F59H6.2 (F59H6.2) mRNA, complete cds. 11/11 None
SNAP00000002426 ENSEMBL cdna:SNAP chromosome:CEL140:II:2019655:2022442:1 10/11 None
GENEFINDER00000002438 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2019655:2022597:1 10/11 None
F59H6.2 ENSEMBL cdna:known chromosome:CEL140:II:2019655:2022442:1 gene:F59H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2019653-2022441(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59H6.2
Entrez Gene 186641 Entrez gene
SwissProt Q9N5Q3 EMBL-EBI
WormBase CE20908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39853 Hypothetical protein F59H6.2 [Caenorhabditis elegans] ref|NP_494153.1| F59H6.2 [Caenorhabditis elegans] 0.0
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 7.0E-70
blast CAA19532 Hypothetical protein Y48A6B.8 [Caenorhabditis elegans] ref|NP_499419.1| Y48A6B.8 [Caenorhabditis elegans] 6.0E-64
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 3.0E-57
Sequence
Target Sequence 
>C. ELEGANS:179890_AT
gctactggcgaatttccgacatgcgatattaccgacctttacaattctagccgtctgatt
gggaaagatgcaattacacaactttcccacttttttatgtctgtcttaaaagacttactt
caaccggtttacaatatttggccctacacgtatcgtccccgctcggttcgtcgcgtggac
aagaattttgtagaattcccaaaggaagtggtccaagcttttgtcggtaagttttttgta
ctacaaaaatcaggattagttgtttttcaacagatgttggacttgatgctgttcttgaag
acgcttggcgacaaatgggaagaagaagttcatcgacgccgaaatgagcgcatcacatgc
atcaccaactccatcgaagctcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTACTGGCGAATTTCCGACATGCG 596 301 1651 Antisense
TCCGACATGCGATATTACCGACCTT 156 595 1665 Antisense
TACCGACCTTTACAATTCTAGCCGT 628 625 1680 Antisense
AGATGCAATTACACAACTTTCCCAC 365 67 1716 Antisense
CTTTCCCACTTTTTTATGTCTGTCT 23 223 1732 Antisense
AATATTTGGCCCTACACGTATCGTC 512 173 1783 Antisense
CTCGGTTCGTCGCGTGGACAAGAAT 189 229 1812 Antisense
GGAAGTGGTCCAAGCTTTTGTCGGT 370 531 1854 Antisense
GATGCTGTTCTTGAAGACGCTTGGC 493 413 1935 Antisense
TGAGCGCATCACATGCATCACCAAC 529 569 1995 Antisense
TCACCAACTCCATCGAAGCTCTTGG 490 625 2012 Antisense
Sequence Source Affymetrix Proprietary Database