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[179889_at]

Description K04C2.2 /REP_DB=WormBase Gene ID /WP=CE00722 /TR=Q21210 /GB=AAA50675.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 94      6grp_total > 69      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 1033.1
(3)
P 		717.3
(-0.1)
P 		842.6
(1.1)
P 		424.8
(-3)
P 		608
B 1038.2
(3)
P 		802.1
(0.6)
P 		776.4
(0.3)
P 		445.9
(-3)
P 		592
C 1063.8
(3)
P 		886.5
(1.4)
P 		1060.3
(3)
P 		400.9
(-3)
P 		663
avr 1045
(3) 		802
(0.7) 		893.1
(1.5) 		423.9
(-3) 		621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 479.3
(-0.8)
P 		568.8
(0.4)
P 		320.8
(-3)
P 		463.7
(-1.1)
P 		580.3
(0.5)
P 		762.6
(3)
P 		442
B 572.9
(-0.4)
P 		589.4
(-0.2)
P 		451.1
(-2.4)
P 		414.1
(-3)
P 		584.2
(-0.2)
P 		783.3
(3)
P 		369
C 554
(-1.6)
P 		511.1
(-2.2)
P 		463.2
(-3)
P 		466.9
(-2.9)
P 		562.3
(-1.4)
P 		842.9
(3)
P 		380
avr 535.4
(-1.1) 		556.4
(-0.7) 		411.7
(-3) 		448.2
(-2.4) 		575.6
(-0.4) 		796.3
(3) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 376.1
(3)
P 		155.7
(-1.2)
P 		220.3
(0)
P 		62.2
(-3)
P 		314
B 331.1
(3)
P 		198.1
(-0.4)
P 		179.9
(-0.8)
P 		95
(-3)
P 		236
C 352.1
(2.7)
P 		254.9
(0.7)
P 		369.5
(3)
P 		67.6
(-3)
P 		302
avr 353.1
(3) 		202.9
(-0.2) 		256.6
(0.9) 		74.9
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 88.3
(-2.2)
P 		202.3
(3)
P 		69.9
(-3)
P 		117.6
(-0.8)
P 		175.1
(1.8)
P 		185.7
(2.2)
P 		132
B 199.3
(-0)
P 		196.2
(-0.2)
P 		109.5
(-3)
P 		109.7
(-3)
P 		237.4
(1.2)
P 		292.1
(3)
P 		183
C 205.3
(0.5)
P 		156
(-1)
P 		117.9
(-2.2)
P 		93.9
(-3)
P 		181.9
(-0.2)
P 		282.2
(3)
P 		188
avr 164.3
(-0.5) 		184.8
(0.3) 		99.1
(-3) 		107.1
(-2.7) 		198.1
(0.9) 		253.3
(3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8074
Sequence Type Exemplar sequence
Representative Public ID K04C2.2 NCBI
Target Description K04C2.2 /REP_DB=WormBase Gene ID /WP=CE00722 /TR=Q21210 /GB=AAA50675.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066098 NCBI Caenorhabditis elegans K04C2.2 (K04C2.2) mRNA, complete cds. 11/11 None
SNAP00000012110 ENSEMBL cdna:SNAP chromosome:CEL140:III:6889707:6894867:1 11/11 None
GENEFINDER00000012114 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6892016:6894867:1 11/11 None
K04C2.2 ENSEMBL cdna:known chromosome:CEL140:III:6889706:6895021:1 gene:K04C2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6889705-6894866(+) 98.92 100.0
Public Domain and Genome References
Gene Title
Ensembl K04C2.2
Entrez Gene 175960 Entrez gene
SwissProt Q21210 EMBL-EBI
WormBase CE00722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50675 Hypothetical protein K04C2.2 [Caenorhabditis elegans] ref|NP_498499.1| K04C2.2 [Caenorhabditis elegans] 0.0
blast CAE71321 Hypothetical protein CBG18218 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007015 EMBL-EBI DNA polymerase V 3.6E-9
Pfam IPR007015 EMBL-EBI DNA polymerase V 3.6E-9
Pfam IPR007015 EMBL-EBI DNA polymerase V 3.6E-9
Sequence
Target Sequence 
>C. ELEGANS:179889_AT
gcacgatgtgtcacttttgtgctcaagattagttctcgcgatggaaaatcgatgtcagct
ggtgtcaaaacagaattccaatcactttttgaaaattatctgaagaatgtggaaggaaag
gttccatcgaattttgtcattcagccaatcgccgatcttccattgctgtttgttgatcaa
cttggaatgctcattgatgccggatttgatgaggagaatcgaattttcaaaagaactgaa
attctcggagccattgcgatgattttcacgaagcaagtgctccaggagacgaatatcaag
ggtgcgattatcaagaaaattggaaaattggccgctgcttacttccagaaagttgttgat
tctgataaatcggagctcaaaccacgcctattcggaactgtccttcaactcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGATGTGTCACTTTTGTGCTCA 404 315 2368 Antisense
GTGCTCAAGATTAGTTCTCGCGATG 535 479 2386 Antisense
GAAAATCGATGTCAGCTGGTGTCAA 709 353 2411 Antisense
AATTTTGTCATTCAGCCAATCGCCG 261 175 2497 Antisense
CGATCTTCCATTGCTGTTTGTTGAT 148 249 2520 Antisense
GGAATGCTCATTGATGCCGGATTTG 313 533 2551 Antisense
GAACTGAAATTCTCGGAGCCATTGC 553 347 2600 Antisense
GAGCCATTGCGATGATTTTCACGAA 338 385 2615 Antisense
TAAATCGGAGCTCAAACCACGCCTA 609 637 2733 Antisense
CAAACCACGCCTATTCGGAACTGTC 82 191 2745 Antisense
TATTCGGAACTGTCCTTCAACTCAT 606 663 2756 Antisense
Sequence Source Affymetrix Proprietary Database