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[179888_at] --- /// Protein phosphatase

Description R13A5.11 /REP_DB=WormBase Gene ID /WP=CE25083 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster 6grp_total > 95      4grp_total > 36      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 32.5
(2.9)
A 		33.1
(3)
P 		4.5
(-3)
A 		32.5
(2.9)
A 		29
B 32.1
(0.2)
A 		48.2
(3)
A 		14.1
(-3)
A 		17
(-2.5)
A 		34
C 35
(2.5)
A 		37.8
(3)
A 		4.7
(-3)
A 		37.3
(2.9)
A 		33
avr 33.2
(1.8) 		39.7
(3) 		7.8
(-3) 		28.9
(1) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 18.4
(-0.9)
A 		3.3
(-2.9)
A 		2.6
(-3)
A 		23.3
(-0.2)
A 		46.8
(3)
A 		5.7
(-2.6)
A 		44
B 22.9
(-0.6)
A 		17.1
(-1.3)
A 		3
(-3)
A 		49.4
(2.6)
M 		38.8
(1.4)
A 		52.3
(3)
P 		49
C 12.2
(-2)
A 		14.3
(-1.7)
A 		10.9
(-2.2)
A 		6.1
(-3)
A 		27.9
(0.6)
A 		42.9
(3)
A 		37
avr 17.8
(-0.7) 		11.6
(-1.9) 		5.5
(-3) 		26.3
(0.9) 		37.8
(3) 		33.6
(2.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.8
(3)
A 		7.2
(0.4)
P 		1.2
(-3)
A 		4.8
(-1)
A 		11
B 10.2
(1.8)
A 		11.9
(3)
A 		3.3
(-3)
A 		3.6
(-2.8)
A 		9
C 11.6
(3)
A 		10.9
(2.6)
A 		1.6
(-3)
A 		6.3
(-0.2)
A 		10
avr 11.2
(3) 		10
(2.2) 		2
(-3) 		4.9
(-1.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.4
(-1.8)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		5.9
(-0.6)
A 		14.1
(3)
A 		1.4
(-2.6)
A 		14
B 8
(-0.7)
A 		5.7
(-1.4)
A 		0.7
(-3)
A 		13.1
(1)
M 		15.8
(1.8)
A 		19.5
(3)
P 		19
C 4.5
(-1.5)
A 		4.3
(-1.6)
A 		2.8
(-2.3)
A 		1.2
(-3)
A 		9
(0.5)
A 		14.4
(3)
A 		13
avr 5.3
(-1) 		3.7
(-1.8) 		1.4
(-3) 		6.7
(-0.3) 		13
(3) 		11.8
(2.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7407
Sequence Type Exemplar sequence
Representative Public ID R13A5.11 NCBI
Target Description R13A5.11 /REP_DB=WormBase Gene ID /WP=CE25083 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066265, NM_066396
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000019640 ENSEMBL cdna:SNAP chromosome:CEL140:III:8222291:8223708:1 None
C30A5.4 ENSEMBL cdna:known chromosome:CEL140:III:8222142:8223708:1 gene:C30A5.4 None
SNAP00000017915 ENSEMBL cdna:SNAP chromosome:CEL140:III:7592406:7593236:-1 None
GENEFINDER00000017919 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7592585:7593236:-1 None
NM_066396 NCBI Caenorhabditis elegans C30A5.4 (C30A5.4) mRNA, complete cds. None
NM_066265 NCBI Caenorhabditis elegans R13A5.11 (R13A5.11) mRNA, complete cds. A 
R13A5.11 ENSEMBL cdna:known chromosome:CEL140:III:7591511:7593122:-1 gene:R13A5.11 A 
GENEFINDER00000019650 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8222142:8224656:1 None
SNAP00000019640 ENSEMBL cdna:SNAP chromosome:CEL140:III:8222291:8223708:1 None
C30A5.4 ENSEMBL cdna:known chromosome:CEL140:III:8222142:8223708:1 gene:C30A5.4 None
NM_066396 NCBI Caenorhabditis elegans C30A5.4 (C30A5.4) mRNA, complete cds. None
NM_066265 NCBI Caenorhabditis elegans R13A5.11 (R13A5.11) mRNA, complete cds. A 
R13A5.11 ENSEMBL cdna:known chromosome:CEL140:III:7591511:7593122:-1 gene:R13A5.11 A 
GENEFINDER00000019650 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8222142:8224656:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8222137-8223704(+) 96.64 96.64
chrIII:7591520-7593120(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Protein phosphatase
Ensembl R13A5.11
C30A5.4
Entrez Gene 176075 Entrez gene
183037 Entrez gene
SwissProt P34350 EMBL-EBI
Q95Y86 EMBL-EBI
WormBase CE00095 Wormbase
CE34584 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84462 Hypothetical protein R13A5.11 [Caenorhabditis elegans] ref|NP_498666.2| R13A5.11 [Caenorhabditis elegans] 0.0
blast AAB59174 Hypothetical protein C30A5.4 [Caenorhabditis elegans] ref|NP_498797.1| C30A5.4 [Caenorhabditis elegans] sp|P34350|YK84_CAEEL Hypothetical protein C30A5.4 in chromosome III 0.0
blast CAE64441 Hypothetical protein CBG09147 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.7E-34
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.0E-9
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-15
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 6.8E-4
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-15
Sequence
Target Sequence 
>C. ELEGANS:179888_AT
gggctttgttccaggtatgtgttctcattctagacgttctgtatttaaaaatatttcagc
gttgtttcaacaatcttccaatctccgctttgatcgctacaaagattctatgcatgcatg
gtggattgtctcctgctctgacatgtcttgatgaacttcgcaatcacccgaaaccaattc
gcaacccattccgtggaattgtgaatgacatgctctgggctgatccggatccatctgttt
ttgaatggaaggcaagttcccgtggatctggtttcaccttcggaacaaatgtgattgatg
acgtttgtaaacgtcttggtgtcgagcttatcatccgtgctcaccaaatgtgtttcgatg
gttattgggtattgagtggacggaagcttatcaccatcttctctgctccaatgtactgca
acttctacaagaacgctggatgtgtgttgaaagttgacgagacgttgggcattcagatga
tcgcatttgttccagcatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTTTGTTCCAGGTATGTGTTCT 409 493 755 Antisense
GTTCCAGGTATGTGTTCTCATTCTA 219 441 762 Antisense
ATGTGTTCTCATTCTAGACGTTCTG 650 49 771 Antisense
CTCATTCTAGACGTTCTGTATTTAA 622 229 778 Antisense
AAAATATTTCAGCGTTGTTTCAACA 670 133 802 Antisense
TTCAGCGTTGTTTCAACAATCTTCC 361 687 809 Antisense
AATTCGCAACCCATTCCGTGGAATT 101 177 930 Antisense
AAGGCAAGTTCCCGTGGATCTGGTT 320 161 1003 Antisense
GAAAGTTGACGAGACGTTGGGCATT 655 359 1203 Antisense
GACGTTGGGCATTCAGATGATCGCA 148 377 1215 Antisense
TGATCGCATTTGTTCCAGCATCGGA 200 565 1232 Antisense
Sequence Source Affymetrix Proprietary Database