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[179887_at]

Description Y68A4A.9 /REP_DB=WormBase Gene ID /WP=CE19259 /TR=Q9XXQ3 /GB=CAA16416.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 08      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 6.3
(-2)
A 		12.4
(1.4)
A 		15.3
(3)
A 		4.4
(-3)
A 		11
B 2.5
(-3)
A 		3.7
(-2.7)
A 		31
(3)
A 		25.5
(1.8)
A 		29
C 11.4
(-1.9)
A 		3.9
(-3)
A 		6
(-2.7)
A 		46.5
(3)
A 		43
avr 6.7
(-3) 		6.7
(-3) 		17.4
(0.4) 		25.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 7.6
(-2)
A 		5.2
(-2.5)
A 		6.7
(-2.2)
A 		36
(3)
A 		2.5
(-2.9)
A 		2.1
(-3)
A 		34
B 49.5
(3)
A 		3.2
(-3)
A 		36.6
(1.3)
A 		5.8
(-2.7)
A 		3.1
(-3)
A 		3.2
(-3)
A 		46
C 1.6
(-3)
A 		34.5
(0.9)
A 		2.2
(-2.9)
A 		51.6
(3)
A 		7
(-2.4)
A 		3.6
(-2.8)
A 		50
avr 19.6
(0.5) 		14.3
(-0.6) 		15.2
(-0.4) 		31.1
(3) 		4.2
(-2.7) 		3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-0)
A 		2.7
(0.7)
A 		4
(3)
A 		0.6
(-3)
A 		3
B 0.8
(-3)
A 		0.9
(-2.9)
A 		7.2
(3)
A 		5.4
(1.3)
A 		6
C 3.8
(-0.6)
A 		1.1
(-3)
A 		2.1
(-2.1)
A 		7.8
(3)
A 		7
avr 2.3
(-1.6) 		1.6
(-3) 		4.4
(2.6) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.4
(-2.4)
A 		1.9
(-2)
A 		1.4
(-2.4)
A 		9.1
(3)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		9
B 17.2
(3)
A 		1.1
(-3)
A 		8.9
(-0.1)
A 		1.5
(-2.9)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		16
C 0.6
(-3)
A 		10.5
(3)
A 		0.6
(-3)
A 		10.4
(2.9)
A 		2.3
(-2)
A 		1.2
(-2.6)
A 		10
avr 6.4
(2.4) 		4.5
(0.5) 		3.6
(-0.4) 		7
(3) 		1.5
(-2.5) 		1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12672
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.9 NCBI
Target Description Y68A4A.9 /REP_DB=WormBase Gene ID /WP=CE19259 /TR=Q9XXQ3 /GB=CAA16416.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075022, NM_074957
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011467 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17212970:17214408:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074957 6/11 Cross Hyb Matching Probes A 
SNAP00000011466 6/11 Cross Hyb Matching Probes None
Y68A4A.9 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17212969-17214484(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16416 Hypothetical protein Y68A4A.9 [Caenorhabditis elegans] ref|NP_507358.2| Serpentine Receptor, class H family member (srh-236) [Caenorhabditis elegans] 1.0E-132
blast CAA16501 Hypothetical protein F08E10.1 [Caenorhabditis elegans] ref|NP_507423.1| Serpentine Receptor, class H family member (srh-235) [Caenorhabditis elegans] 1.0E-124
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.8E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011467 6 20-42,63-82,122-144,165-187,200-219,240-262
Sequence
Target Sequence 
>C. ELEGANS:179887_AT
cctcaactttcaaatgacggccgtcagttgttcgtttttgccactgaacttcttggtcca
gccatcacgattattctggcagagtcggtcccaactatccagtgtggaacatttctagct
ctcaacatttacaacttgatcttcgccagacaaagtgggatttccaagaagacagttcaa
atgcaacacaggcttgtggtcgcttttattatacagacatcagtgacactgattcttttt
gtggtgcctgtcaattcatttatatactttgactatcagaatcaatttcataacaatttg
atagtctttgcatttgcggttcacggaattgcctccacactcatcatggtttttgttcat
aggccatatcgagactttgtctattcgccgtttcggcggctttttggaaatcacaaggtc
agcattatttgtgtgtttggcttttattgcactgtttttgaaatcccagttttttggtac
atgacactcacaacccatttacatgtatgcctctttaacgcacagggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCAACTTTCAAATGACGGCCGTC 708 231 388 Antisense
TTCTTGGTCCAGCCATCACGATTAT 351 689 437 Antisense
TCGGTCCCAACTATCCAGTGTGGAA 569 603 472 Antisense
ATTTACAACTTGATCTTCGCCAGAC 276 15 514 Antisense
AGGCTTGTGGTCGCTTTTATTATAC 232 39 577 Antisense
GCCTCCACACTCATCATGGTTTTTG 598 281 718 Antisense
TTCGGCGGCTTTTTGGAAATCACAA 80 695 779 Antisense
GGTCAGCATTATTTGTGTGTTTGGC 596 503 804 Antisense
GTTTGGCTTTTATTGCACTGTTTTT 567 451 822 Antisense
CAACCCATTTACATGTATGCCTCTT 415 185 878 Antisense
GTATGCCTCTTTAACGCACAGGGAG 41 455 892 Antisense
Sequence Source Affymetrix Proprietary Database