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[179885_at]

Description K05F6.8 /REP_DB=WormBase Gene ID /WP=CE17166 /TR=O44867 /GB=AAB95028.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 20.8
(3)
A 		13.9
(-0.1)
A 		7.6
(-3)
A 		16.9
(1.2)
A 		13
B 22.2
(-1.9)
A 		11.2
(-3)
A 		14.1
(-2.7)
A 		69.3
(3)
A 		58
C 17
(-2.5)
A 		11.4
(-3)
A 		30.1
(-1.2)
A 		73.9
(3)
A 		63
avr 20
(-1.9) 		12.2
(-3) 		17.3
(-2.3) 		53.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 14.8
(-2.6)
A 		17.4
(-2.2)
A 		34.1
(0.3)
A 		52.8
(3)
A 		12
(-3)
A 		14.8
(-2.6)
A 		41
B 10.1
(-2.3)
A 		53.6
(3)
A 		15.3
(-1.7)
A 		35.7
(0.8)
A 		39.9
(1.3)
A 		4.8
(-3)
A 		49
C 40.2
(1.8)
A 		10.8
(-2.4)
A 		11.9
(-2.3)
A 		48.1
(3)
A 		9.4
(-2.6)
A 		6.9
(-3)
A 		41
avr 21.7
(-0.9) 		27.3
(0) 		20.4
(-1.1) 		45.5
(3) 		20.4
(-1.1) 		8.8
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.6
(3)
A 		3
(-1.9)
A 		2
(-3)
A 		2.5
(-2.5)
A 		6
B 7.1
(-0.9)
A 		2.8
(-3)
A 		3.3
(-2.8)
A 		14.8
(3)
A 		12
C 5.6
(-1.5)
A 		3.3
(-3)
A 		10.5
(1.7)
A 		12.5
(3)
A 		9
avr 6.8
(0.3) 		3
(-3) 		5.3
(-1) 		9.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.7
(-3)
A 		6.2
(-1)
A 		7.4
(-0.4)
A 		13.4
(3)
A 		3.6
(-2.5)
A 		3.6
(-2.5)
A 		11
B 3.5
(-2.4)
A 		17.8
(3)
A 		3.7
(-2.3)
A 		9.5
(-0.1)
A 		16.2
(2.4)
A 		1.8
(-3)
A 		16
C 14.9
(3)
A 		3.3
(-2.5)
A 		3
(-2.7)
A 		9.7
(0.5)
A 		3
(-2.7)
A 		2.3
(-3)
A 		13
avr 7
(0.2) 		9.1
(1.7) 		4.7
(-1.5) 		10.9
(3) 		7.6
(0.6) 		2.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5573
Sequence Type Exemplar sequence
Representative Public ID K05F6.8 NCBI
Target Description K05F6.8 /REP_DB=WormBase Gene ID /WP=CE17166 /TR=O44867 /GB=AAB95028.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061596 NCBI Caenorhabditis elegans K05F6.8 (K05F6.8) mRNA, complete cds. 11/11 None
K05F6.8 ENSEMBL cdna:known chromosome:CEL140:II:1567330:1567752:-1 gene:K05F6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1567328-1567751(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.8
Entrez Gene 187037 Entrez gene
SwissProt O44867 EMBL-EBI
WormBase CE17166 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95028 Hypothetical protein K05F6.8 [Caenorhabditis elegans] ref|NP_493997.1| K05F6.8 [Caenorhabditis elegans] 1.0E-66
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 2.0E-21
blast AAB95031 Hypothetical protein K05F6.2 [Caenorhabditis elegans] ref|NP_493996.1| K05F6.2 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.6E-7
Sequence
Target Sequence 
>C. ELEGANS:179885_AT
atgatcgccagcaagatgcccagagaagtacgattaccatcctttcagatagaaatcatc
ggtgctatgagcacatacaagatctactgccagtcactactgcccctatctcattctgct
ctcctaataatggttgcaccgtcttttcctcttctcaatctccctgagaaaagcctaaag
gaggttttttgcaatatgtcagtagtgcaacaaacatgcatctcaatgatttccgagaaa
accaaaaatttggtcagaaagtttcacatcttcaaacaagttcaaatatggttggatttt
tctgattcgctgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATCGCCAGCAAGATGCCCAGAG 259 47 13 Antisense
AGATGCCCAGAGAAGTACGATTACC 481 67 26 Antisense
GTACGATTACCATCCTTTCAGATAG 200 459 40 Antisense
GAGCACATACAAGATCTACTGCCAG 442 389 81 Antisense
AAGATCTACTGCCAGTCACTACTGC 552 153 91 Antisense
TCTCATTCTGCTCTCCTAATAATGG 266 613 121 Antisense
AATAATGGTTGCACCGTCTTTTCCT 660 169 138 Antisense
CTCAATCTCCCTGAGAAAAGCCTAA 504 227 166 Antisense
AAACATGCATCTCAATGATTTCCGA 204 129 224 Antisense
TTGGTCAGAAAGTTTCACATCTTCA 398 709 262 Antisense
GGTTGGATTTTTCTGATTCGCTGAG 517 507 302 Antisense
Sequence Source Affymetrix Proprietary Database