[Home] | [Total List]

[179884_s_at]

Description F52E4.4 /REP_DB=WormBase Gene ID /WP=CE10834 /TR=Q20673 /GB=AAB54033.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 49      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.5
(-3)
A 		16
(3)
A 		13.7
(1.8)
A 		9.2
(-0.5)
A 		12
B 4.6
(-3)
A 		13.1
(3)
A 		6
(-2)
A 		5.4
(-2.4)
A 		9
C 10.2
(0.3)
A 		7.1
(-3)
A 		12.7
(3)
A 		7.2
(-2.9)
A 		6
avr 6.4
(-3) 		12.1
(3) 		10.8
(1.6) 		7.3
(-2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 15.3
(-2.6)
A 		17
(-2.4)
A 		11.1
(-3)
A 		12.5
(-2.9)
A 		69.6
(3)
A 		44.6
(0.4)
A 		59
B 11.7
(-2.8)
A 		34.8
(1.7)
A 		41.6
(3)
A 		18.6
(-1.4)
A 		10.5
(-3)
A 		22
(-0.8)
A 		31
C 12.3
(-1.8)
A 		34.2
(3)
A 		8.5
(-2.6)
A 		11
(-2.1)
A 		31
(2.3)
A 		6.7
(-3)
A 		28
avr 13.1
(-3) 		28.7
(0.9) 		20.4
(-1.2) 		14
(-2.8) 		37
(3) 		24.4
(-0.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.6
(-2.2)
A 		3.5
(2.7)
A 		3.6
(3)
A 		1.3
(-3)
A 		2
B 1.5
(-1.9)
A 		3.2
(3)
A 		1.4
(-2.1)
A 		1.1
(-3)
A 		2
C 3.4
(1.1)
A 		2
(-1.5)
A 		4.4
(3)
A 		1.2
(-3)
A 		3
avr 2.2
(0.2) 		2.9
(2.4) 		3.1
(3) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.8
(-2.9)
A 		6
(-1.8)
A 		2.4
(-3)
A 		3.2
(-2.7)
A 		21
(3)
A 		10.8
(-0.3)
A 		19
B 4.1
(-3)
A 		11.6
(3)
A 		10.1
(1.8)
A 		4.9
(-2.4)
A 		4.3
(-2.8)
A 		8.2
(0.3)
A 		8
C 4.6
(-1.2)
A 		10.4
(3)
A 		2.2
(-3)
A 		2.2
(-3)
A 		10
(2.7)
A 		2.3
(-2.9)
A 		8
avr 3.8
(-2.7) 		9.3
(1.2) 		4.9
(-1.9) 		3.4
(-3) 		11.8
(3) 		7.1
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179884_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18494
Sequence Type Exemplar sequence
Representative Public ID F52E4.4 NCBI
Target Description F52E4.4 /REP_DB=WormBase Gene ID /WP=CE10834 /TR=Q20673 /GB=AAB54033.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076125 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-16) (twk-16) mRNA, complete cds. 11/11 None
GENEFINDER00000026394 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3082495:3085327:1 11/11 None
SNAP00000026383 ENSEMBL cdna:SNAP chromosome:CEL140:X:3083745:3085327:1 11/11 None
F52E4.4 ENSEMBL cdna:known chromosome:CEL140:X:3081124:3085327:1 gene:F52E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3082494-3085327(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol twk-16
Ensembl F52E4.4
Entrez Gene 180594 Entrez gene
SwissProt Q20673 EMBL-EBI
WormBase CE31178 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54033 Twik family of potassium channels protein 16 [Caenorhabditis elegans] ref|NP_508526.2| TWiK family of potassium channels family member (twk-16) [Caenorhabditis elegans] gb|AAC32856.1| potassium channel subunit n2P16 [Caenorhabditis elegans] 0.0
blast CAE68372 Hypothetical protein CBG14128 [Caenorhabditis briggsae] 0.0
blast CAB03109 Hypothetical protein F46A9.3a [Caenorhabditis elegans] ref|NP_001021467.1| TWiK family of potassium channels family member (twk-29) [Caenorhabditis elegans] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508526.2 6 22-44,107-129,136-158,196-218,225-247,251-273
F52E4.4 6 22-44,107-129,136-158,196-218,225-247,251-273
GENEFINDER00000026394 6 21-40,103-125,132-154,192-214,221-243,247-269
SNAP00000026383 3 48-70,77-99,103-125
Sequence
Target Sequence 
>C. ELEGANS:179884_S_AT
ttgaacgatgagccaccacgtgagccatctcctcgttcaatcattcattcaccgtgttcc
acaagaccatcgaatcctccaatgagcccaccatctccacgagaagaccacccatttata
ttcaaaatggatgctcctgctcctcgaagcccattaccattgccggcatatgaattggat
atcaaaaagccgatatttcaggcattgtccaatgagtttatgaaccaatcggcgcaggag
aagttgtttaatgatctcgatacttttcaaattgaaattaatactgagctagttgaggat
cataaatgtgaaagtgttatcattattgaaccaccagcaacatttgaagacatgactata
caacacagtctttgtgttgaagattatgagagggaagaaaaagttccgaaacgattccgc
gaaaagaaagaaatgtatggtcgagacccgcgtaaactgtatgaaacttatcaagaggaa
tgggatagattggaacggttatcagataggaagcacggtccgagaaggaagtcagttttg
aacttatcaaactgttcaccggaacgaagtgtttccccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAACGATGAGCCACCACGTGAGC 658 703 1039 Antisense
CAATCATTCATTCACCGTGTTCCAC 576 181 1076 Antisense
GTGTTCCACAAGACCATCGAATCCT 529 485 1092 Antisense
TCCACGAGAAGACCACCCATTTATA 418 587 1134 Antisense
TTCAAAATGGATGCTCCTGCTCCTC 125 687 1159 Antisense
CCCATTACCATTGCCGGCATATGAA 445 257 1188 Antisense
GCCGATATTTCAGGCATTGTCCAAT 525 283 1227 Antisense
GAGTTTATGAACCAATCGGCGCAGG 77 399 1252 Antisense
GTCGAGACCCGCGTAAACTGTATGA 10 475 1478 Antisense
ACTTATCAAACTGTTCACCGGAACG 580 95 1580 Antisense
TCACCGGAACGAAGTGTTTCCCCAT 81 623 1594 Antisense
Sequence Source Affymetrix Proprietary Database