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[179882_at]

Description K01G12.2 /REP_DB=WormBase Gene ID /WP=CE16201 /TR=O45632 /GB=CAB05236.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 6.7
(-3)
A 		19.8
(-0.5)
A 		21.4
(-0.2)
A 		38.4
(3)
A 		32
B 27
(-3)
A 		60.1
(1.6)
A 		70.6
(3)
A 		35.1
(-1.9)
A 		44
C 28.5
(-3)
A 		74.8
(1.6)
A 		30.4
(-2.8)
A 		89.3
(3)
A 		61
avr 20.7
(-3) 		51.6
(2.5) 		40.8
(0.6) 		54.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 56.6
(3)
A 		31
(-0.2)
A 		41.6
(1.1)
A 		25.8
(-0.9)
A 		27.5
(-0.7)
A 		9.1
(-3)
A 		48
B 35.1
(3)
A 		2.8
(-2.8)
A 		4.8
(-2.4)
A 		1.7
(-3)
A 		32.6
(2.6)
A 		32.7
(2.6)
A 		33
C 37.4
(0.8)
A 		57.4
(3)
A 		4.2
(-3)
A 		11.2
(-2.2)
A 		35.8
(0.6)
A 		4
(-3)
A 		53
avr 43
(3) 		30.4
(0.5) 		16.9
(-2.2) 		12.9
(-3) 		32
(0.8) 		15.3
(-2.5) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.5
(-3)
A 		4.3
(0.5)
A 		5.6
(3)
A 		5.6
(3)
A 		3
B 8.6
(-2.3)
A 		14.9
(2)
A 		16.4
(3)
A 		7.5
(-3)
A 		9
C 9.4
(-3)
A 		21.5
(3)
A 		10.6
(-2.4)
A 		15
(-0.2)
A 		12
avr 6.8
(-3) 		13.6
(3) 		10.9
(0.6) 		9.4
(-0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.4
(2.6)
A 		11
(3)
A 		9.1
(1.7)
A 		6.5
(-0.1)
A 		8.3
(1.2)
A 		2.2
(-3)
A 		9
B 12.2
(2.5)
A 		0.9
(-2.8)
A 		1.2
(-2.6)
A 		0.4
(-3)
A 		13.3
(3)
A 		12.2
(2.5)
A 		13
C 13.8
(1.6)
A 		17.5
(3)
A 		1.1
(-3)
A 		2.3
(-2.6)
A 		11.6
(0.8)
A 		1.3
(-2.9)
A 		16
avr 12.1
(3) 		9.8
(1.5) 		3.8
(-2.5) 		3.1
(-3) 		11.1
(2.3) 		5.2
(-1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9597
Sequence Type Exemplar sequence
Representative Public ID K01G12.2 NCBI
Target Description K01G12.2 /REP_DB=WormBase Gene ID /WP=CE16201 /TR=O45632 /GB=CAB05236.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070320 NCBI Caenorhabditis elegans R05A10.1 (R05A10.1) mRNA, complete cds. 11/11 None
SNAP00000037703 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14192188:14192643:1 9/11 None
R05A10.1 ENSEMBL cdna:known chromosome:CEL140:IV:14182346:14192643:1 gene:R05A10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037702 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037707 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14190209-14192649(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.1
Entrez Gene 178372 Entrez gene
SwissProt O45699 EMBL-EBI
WormBase CE36884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05263 Hypothetical protein R05A10.1 [Caenorhabditis elegans] emb|CAC42314.2| Hypothetical protein R05A10.1 [Caenorhabditis elegans] ref|NP_502721.2| R05A10.1 [Caenorhabditis elegans] 0.0
blast T23192 hypothetical protein K01G12.2 - Caenorhabditis elegans 4.0E-99
blast CAE71759 Hypothetical protein CBG18749 [Caenorhabditis briggsae] 1.0E-68
blast CAB05263 Hypothetical protein R05A10.1 [Caenorhabditis elegans] emb|CAC42314.2| Hypothetical protein R05A10.1 [Caenorhabditis elegans] ref|NP_502721.2| R05A10.1 [Caenorhabditis elegans] 2.0E-50
blast T23192 hypothetical protein K01G12.2 - Caenorhabditis elegans 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:179882_AT
gaaattctgctcattcgtcatcttccatgtcgccctcttcctcatcttccccttcttcat
ctaaaataattggaactcaaaccgtcggagcaagtcttcaaacaatcaaaagcggtgaca
aacacgacactggccttgtcgacttgaatcaacggaacgatcaaaaaatgagtggatctg
ataaaatgaaggccggaagtgtacacggatcaaagtcaaatgttgattggaagggaagaa
aaatgctcaaccatcacaaagcaaaattccaattttggcttggtctgatgatagctcagt
ataaaattttatcgtcaaaaattgaggaatacccagaaactctcgacataagacatcacg
caacaatgcaacacccattaaaggagaagaatacaactactctgctcgaccaaataattc
gaaaaagttatcatgatcatctggtacctacacctaattttccggatcacaatcgacaag
ttgctccacaagatgagcctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCTGCTCATTCGTCATCTTC 9 365 53 Antisense
TCTTCCCCTTCTTCATCTAAAATAA 570 617 97 Antisense
TTTGGCTTGGTCTGATGATAGCTCA 244 667 326 Antisense
AGGAATACCCAGAAACTCTCGACAT 114 55 377 Antisense
CTCTCGACATAAGACATCACGCAAC 476 231 392 Antisense
ATCACGCAACAATGCAACACCCATT 705 27 407 Antisense
CAACTACTCTGCTCGACCAAATAAT 517 187 446 Antisense
CATGATCATCTGGTACCTACACCTA 231 209 484 Antisense
CCTACACCTAATTTTCCGGATCACA 49 267 499 Antisense
GATCACAATCGACAAGTTGCTCCAC 685 421 517 Antisense
GTTGCTCCACAAGATGAGCCTCAGA 688 439 532 Antisense
Sequence Source Affymetrix Proprietary Database