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[179881_at]

Description Y47D3B.3 /REP_DB=WormBase Gene ID /WP=CE19176 /TR=Q9XX04 /GB=CAA21038.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 41
(-2.7)
A 		37.5
(-3)
A 		59.6
(-1)
A 		104.3
(3)
A 		67
B 71.1
(3)
A 		31.3
(-0.5)
A 		52.6
(1.4)
A 		3.6
(-3)
A 		68
C 26.2
(-3)
A 		51.6
(1.3)
A 		62
(3)
A 		59
(2.5)
A 		36
avr 46.1
(-1) 		40.1
(-3) 		58.1
(3) 		55.6
(2.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 15.2
(-2.4)
A 		7.9
(-3)
A 		78
(3)
A 		71.1
(2.4)
A 		8.1
(-3)
A 		9.1
(-2.9)
A 		70
B 63.4
(3)
A 		21.1
(-1.9)
A 		56.8
(2.2)
A 		63.4
(3)
A 		11.3
(-3)
A 		44.1
(0.8)
A 		52
C 57.2
(1.8)
A 		65.1
(3)
A 		51.6
(1)
A 		24.2
(-3)
A 		31.1
(-2)
A 		26
(-2.7)
A 		41
avr 45.3
(0.8) 		31.4
(-1.1) 		62.1
(3) 		52.9
(1.8) 		16.8
(-3) 		26.4
(-1.7) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.9
(2.4)
A 		8.1
(-3)
A 		15.6
(3)
A 		15.3
(2.8)
A 		8
B 22.7
(3)
A 		7.7
(-1.1)
A 		12.2
(0.1)
A 		0.8
(-3)
A 		22
C 8.7
(-3)
A 		14.8
(-0.2)
A 		21.6
(3)
A 		9.9
(-2.4)
A 		13
avr 15.4
(2.2) 		10.2
(-1.8) 		16.5
(3) 		8.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		2.8
(-2.8)
A 		17
(2.6)
A 		18
(3)
A 		2.4
(-2.9)
A 		2.2
(-3)
A 		16
B 22.1
(3)
A 		7
(-2.2)
A 		13.8
(0.2)
A 		16.8
(1.2)
A 		4.6
(-3)
A 		16.4
(1)
A 		18
C 21.2
(3)
A 		19.9
(2.5)
A 		13.1
(0)
A 		4.9
(-3)
A 		10.1
(-1.1)
A 		8.7
(-1.6)
A 		16
avr 15.4
(3) 		9.9
(-0.4) 		14.6
(2.5) 		13.2
(1.6) 		5.7
(-3) 		9.1
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7421
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.3 NCBI
Target Description Y47D3B.3 /REP_DB=WormBase Gene ID /WP=CE19176 /TR=Q9XX04 /GB=CAA21038.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067068
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004526 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11396192:11408189:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067067 2/11 Cross Hyb Matching Probes None
NM_067068 6/11 Cross Hyb Matching Probes None
GENEFINDER00000005914 1/11 Cross Hyb Matching Probes None
Y47D3B.3 2/11 Cross Hyb Matching Probes None
Y47D3B.4 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11396187-11405783(+) 92.46 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21038 Hypothetical protein Y47D3B.3 [Caenorhabditis elegans] ref|NP_499468.2| Y47D3B.3 [Caenorhabditis elegans] 0.0
blast CAE67714 Hypothetical protein CBG13288 [Caenorhabditis briggsae] 1.0E-141
blast CAA21037 Hypothetical protein Y47D3B.4 [Caenorhabditis elegans] ref|NP_499469.2| Y47D3B.4 [Caenorhabditis elegans] 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004526 3 51-73,105-122,473-495
Sequence
Target Sequence 
>C. ELEGANS:179881_AT
gccggtcagggaagtgtattggaggtgaagaacaaaagaaatgcgagactgaaaacgatt
gtgaagctggtggctggtgtatggagggaagatgtgttgagaacaagtgcgatgaagatt
ccgattgtgcagtagagagagccatttgtaaagttggaatagagcaaatatttttctatt
ttgtatcattaaattttaatgaaaaatattggggggaacatgcccaacagtctaattttg
tagaattttgtagaattacccctgctatgaatgtttctacatttattttgaaaattttac
tgatttttattttcatcttttggaaattcaaggagactaaatttggcgaggagaactccc
ctgattacgaggacaactttgatgctgaaaaagatgaaatatttgtgaaaaactacttga
aactaatgcaaatgggccgtgcaccagctcgcccagttgttgagaagaagcataatgtcg
aggaatcctattggtgctttttgagcccaccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGTCAGGGAAGTGTATTGGAGG 353 283 1175 Antisense
AGCTGGTGGCTGGTGTATGGAGGGA 22 81 1239 Antisense
GGGAACATGCCCAACAGTCTAATTT 642 471 1388 Antisense
GAATTTTGTAGAATTACCCCTGCTA 46 325 1417 Antisense
TTACCCCTGCTATGAATGTTTCTAC 73 683 1430 Antisense
ATTTGGCGAGGAGAACTCCCCTGAT 545 1 1515 Antisense
GAACTCCCCTGATTACGAGGACAAC 14 349 1527 Antisense
AATGCAAATGGGCCGTGCACCAGCT 507 165 1599 Antisense
CCAGCTCGCCCAGTTGTTGAGAAGA 479 273 1618 Antisense
CGAGGAATCCTATTGGTGCTTTTTG 50 251 1653 Antisense
TTGGTGCTTTTTGAGCCCACCGAAA 134 703 1665 Antisense
Sequence Source Affymetrix Proprietary Database