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[179880_at] ribonuclease

Description K10C9.2 /REP_DB=WormBase Gene ID /WP=CE18044 /TR=O61889 /GB=AAC17670.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 96      6grp_total > 85      4grp_total > 34      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 486
1 2 3 4 range
A 737.7
(-3)
P 		1185.2
(3)
P 		967.1
(0.1)
P 		1066.3
(1.4)
P 		448
B 783.4
(-3)
P 		1052.8
(0.7)
P 		928.5
(-1)
P 		1223.5
(3)
P 		440
C 788.6
(-3)
P 		1065.5
(2.2)
P 		922
(-0.5)
P 		1106.6
(3)
P 		318
avr 769.9
(-3) 		1101.2
(2.5) 		939.2
(-0.2) 		1132.1
(3) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 591
1 2 3 4 5 6 range
A 891.6
(1.9)
P 		655.9
(-3)
P 		778.8
(-0.4)
P 		934.1
(2.8)
P 		944
(3)
P 		928.9
(2.7)
P 		288
B 804.7
(-1.1)
P 		696.9
(-3)
P 		955.5
(1.7)
P 		928.9
(1.2)
P 		1009.7
(2.7)
P 		1028.8
(3)
P 		332
C 692.2
(-3)
P 		718.3
(-2.7)
P 		696.2
(-3)
P 		943.3
(-0.3)
P 		928.6
(-0.4)
P 		1247.3
(3)
P 		555
avr 796.2
(-1.3) 		690.4
(-3) 		810.2
(-1.1) 		935.4
(0.9) 		960.8
(1.3) 		1068.3
(3) 		378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 268.6
(3)
P 		257.3
(2.4)
P 		252.8
(2.2)
P 		156.1
(-3)
P 		113
B 249.8
(1.6)
P 		260
(2.9)
P 		215.2
(-3)
P 		260.7
(3)
P 		46
C 261
(0.3)
P 		306.3
(2.3)
P 		321.4
(3)
P 		186.6
(-3)
P 		135
avr 259.8
(1.8) 		274.5
(3) 		263.1
(2.1) 		201.1
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 164.4
(-3)
P 		233.3
(0.4)
P 		169.6
(-2.7)
P 		236.9
(0.6)
P 		284.9
(3)
P 		226.2
(0.1)
P 		121
B 280
(-1.4)
P 		232
(-3)
P 		232
(-3)
P 		246
(-2.5)
P 		410.2
(3)
P 		383.6
(2.1)
P 		178
C 256.6
(-1)
P 		219.2
(-2)
P 		177.2
(-3)
P 		189.7
(-2.7)
P 		300.5
(0.1)
P 		417.5
(3)
P 		240
avr 233.7
(-1.4) 		228.2
(-1.6) 		192.9
(-3) 		224.2
(-1.7) 		331.9
(2.6) 		342.4
(3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15700
Sequence Type Exemplar sequence
Representative Public ID K10C9.2 NCBI
Target Description K10C9.2 /REP_DB=WormBase Gene ID /WP=CE18044 /TR=O61889 /GB=AAC17670.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070969 NCBI Caenorhabditis elegans K10C9.3 (ribonuclease) mRNA, complete cds. 11/11 A 
SNAP00000001032 ENSEMBL cdna:SNAP chromosome:CEL140:V:1064945:1067686:1 11/11 None
GENEFINDER00000001035 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1061427:1065298:1 11/11 None
K10C9.3 ENSEMBL cdna:known chromosome:CEL140:V:1061425:1067689:1 gene:K10C9.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1064944-1067686(+) 100.0 100.0
Public Domain and Genome References
Gene Title ribonuclease
Ensembl K10C9.3
Entrez Gene 190096 Entrez gene
SwissProt O61887 EMBL-EBI
WormBase CE28601 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636484_AT Ribonuclease X25 dm
DROSGENOME1:152173_AT Ribonuclease X25 dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
4521 endoribonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503370 K10C9.3 [Caenorhabditis elegans] gb|AAC17670.2| Hypothetical protein K10C9.3 [Caenorhabditis elegans] 1.0E-156
blast NP_503370 K10C9.3 [Caenorhabditis elegans] gb|AAC17670.2| Hypothetical protein K10C9.3 [Caenorhabditis elegans] 1.0E-140
blast CAE71034 Hypothetical protein CBG17875 [Caenorhabditis briggsae] 1.0E-117
blast CAE71034 Hypothetical protein CBG17875 [Caenorhabditis briggsae] 1.0E-110
blast NP_503370 K10C9.3 [Caenorhabditis elegans] gb|AAC17670.2| Hypothetical protein K10C9.3 [Caenorhabditis elegans] 2.0E-70
blast CAE71034 Hypothetical protein CBG17875 [Caenorhabditis briggsae] 1.0E-45
blast BAA09448.1 Sf-RNase precursor [Malus x domestica] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001568 EMBL-EBI Ribonuclease T2 1.9E-39
Pfam IPR001568 EMBL-EBI Ribonuclease T2 1.5E-4
Sequence
Target Sequence 
>C. ELEGANS:179880_AT
agtcttcgactctatcgatgtggctggaggattgaaatcagttggaccatcggaaaaacc
aatcacctcgagcgacttgaaaaacgcgttgagcggagtcaccagcggaaaaactttcca
attccattgcctccgggataagaagaccaaacagttccttctcggtgacattcgcttgtg
tctcaacaaggacttgacaatccgagactgtccgactgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCTTCGACTCTATCGATGTGGCT 688 61 18 Antisense
GATTGAAATCAGTTGGACCATCGGA 399 431 47 Antisense
GACCATCGGAAAAACCAATCACCTC 350 383 62 Antisense
AACCAATCACCTCGAGCGACTTGAA 634 147 74 Antisense
AACGCGTTGAGCGGAGTCACCAGCG 438 145 100 Antisense
GAGCGGAGTCACCAGCGGAAAAACT 636 383 108 Antisense
GAAAAACTTTCCAATTCCATTGCCT 521 355 125 Antisense
CAATTCCATTGCCTCCGGGATAAGA 428 179 136 Antisense
CAAACAGTTCCTTCTCGGTGACATT 364 191 165 Antisense
GGTGACATTCGCTTGTGTCTCAACA 449 501 181 Antisense
ACAATCCGAGACTGTCCGACTGATG 185 115 214 Antisense
Sequence Source Affymetrix Proprietary Database