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[179879_at]

Description Y51H4A.5 /REP_DB=WormBase Gene ID /WP=CE22331 /TR=Q9NAE3 /GB=CAB61137.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 31      6grp_highest_nonorm > 62      6grp_total > 52      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 199.1
(3)
P 		124.5
(-1.3)
P 		117.3
(-1.7)
P 		94.8
(-3)
A 		104
B 173.3
(3)
P 		140
(1.5)
P 		150.2
(1.9)
P 		42.8
(-3)
A 		131
C 167.9
(3)
P 		116.6
(0.5)
A 		112.4
(0.3)
P 		43.1
(-3)
A 		125
avr 180.1
(3) 		127
(0.3) 		126.6
(0.3) 		60.2
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1124
1 2 3 4 5 6 range
A 319.4
(-1.6)
P 		477
(-0.4)
P 		915.8
(3)
P 		285.5
(-1.9)
P 		162
(-2.8)
P 		140.1
(-3)
P 		776
B 335.4
(-1.7)
P 		534.5
(-0.6)
P 		1211.7
(3)
P 		340.9
(-1.6)
P 		234
(-2.2)
P 		87.9
(-3)
P 		1124
C 352.7
(-1.3)
P 		486.1
(-0.4)
P 		944
(3)
P 		373.6
(-1.2)
P 		209.3
(-2.4)
P 		125.4
(-3)
P 		819
avr 335.8
(-1.6) 		499.2
(-0.5) 		1023.8
(3) 		333.3
(-1.6) 		201.8
(-2.4) 		117.8
(-3) 		906
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 72.5
(3)
P 		27
(-1.7)
P 		30.7
(-1.3)
P 		13.9
(-3)
A 		59
B 55.3
(3)
P 		34.6
(0.3)
P 		34.8
(0.3)
P 		9.1
(-3)
A 		46
C 55.6
(3)
P 		33.5
(0.3)
A 		39.2
(1)
P 		7.3
(-3)
A 		48
avr 61.1
(3) 		31.7
(-0.5) 		34.9
(-0.1) 		10.1
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 58.9
(-2.1)
P 		169.7
(1.9)
P 		199.4
(3)
P 		72.4
(-1.6)
P 		48.9
(-2.5)
P 		34.1
(-3)
P 		165
B 116.7
(-1.1)
P 		177.9
(0.3)
P 		294.2
(3)
P 		90.3
(-1.7)
P 		95.1
(-1.6)
P 		32.8
(-3)
P 		261
C 130.7
(-0.3)
P 		148.3
(0.2)
P 		240.3
(3)
P 		75.1
(-2)
P 		67.7
(-2.2)
P 		42
(-3)
P 		198
avr 102.1
(-1.1) 		165.3
(0.7) 		244.6
(3) 		79.3
(-1.8) 		70.6
(-2) 		36.3
(-3) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9946
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.5 NCBI
Target Description Y51H4A.5 /REP_DB=WormBase Gene ID /WP=CE22331 /TR=Q9NAE3 /GB=CAB61137.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070561 NCBI Caenorhabditis elegans Y51H4A.5 (Y51H4A.5) mRNA, complete cds. 11/11 None
SNAP00000000179 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16522543:16526997:-1 11/11 None
GENEFINDER00000000202 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16522543:16526082:-1 11/11 None
Y51H4A.5 ENSEMBL cdna:known chromosome:CEL140:IV:16522543:16529370:-1 gene:Y51H4A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16522548-16529376(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.5
Entrez Gene 190146 Entrez gene
SwissProt Q9NAE3 EMBL-EBI
WormBase CE22331 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61137 Hypothetical protein Y51H4A.5 [Caenorhabditis elegans] ref|NP_502962.1| Y51H4A.5 [Caenorhabditis elegans] 0.0
blast CAB61137 Hypothetical protein Y51H4A.5 [Caenorhabditis elegans] ref|NP_502962.1| Y51H4A.5 [Caenorhabditis elegans] 1.0E-179
blast CAB11554 Hypothetical protein Y49E10.18 [Caenorhabditis elegans] ref|NP_499623.2| Y49E10.18 [Caenorhabditis elegans] 1.0E-139
blast CAB61137 Hypothetical protein Y51H4A.5 [Caenorhabditis elegans] ref|NP_502962.1| Y51H4A.5 [Caenorhabditis elegans] 1.0E-124
blast CAE66471 Hypothetical protein CBG11750 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.6E-63
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.6E-63
Pfam IPR002921 EMBL-EBI Lipase, class 3 6.6E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502962.1 2 10-32,159-181
Y51H4A.5 2 10-32,159-181
Sequence
Target Sequence 
>C. ELEGANS:179879_AT
gaactgatagccccctacagttgactgatgagattttggacttttttaccggaaaaaagc
aattcttccctgacgctggcaacattttcacctatttctacgatgccttcttctttctct
ggaatgctggtctacaacaggatatccgtcagctaaagtacaaatatccagactacgaac
tatgggtaactgggcactctttaggtggagccctagcttcagttgcagcttcttatgttg
ttcatacgggtattttcacaagtgataaggtgaaacttgtcactttgggacaaccgagaa
ccggagattacgattatgctacgtggcacgataaaaactttccctattcgttccgtattg
tgcaccgtcgggaccttgtcgcccatattccaccacaggacggagctgacaaacttttcc
atcacagaagtgaagtttggtacaacaacaatatgagcactactgagccatatcatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGATAGCCCCCTACAGTTGAC 401 349 920 Antisense
AAAAAGCAATTCTTCCCTGACGCTG 558 129 973 Antisense
TGACGCTGGCAACATTTTCACCTAT 246 571 990 Antisense
CTTTCTCTGGAATGCTGGTCTACAA 402 223 1032 Antisense
GAACTATGGGTAACTGGGCACTCTT 358 349 1096 Antisense
GCACTCTTTAGGTGGAGCCCTAGCT 638 313 1113 Antisense
CCCTAGCTTCAGTTGCAGCTTCTTA 645 257 1130 Antisense
TTTCCCTATTCGTTCCGTATTGTGC 672 667 1258 Antisense
ATTCCACCACAGGACGGAGCTGACA 515 7 1306 Antisense
AGCTGACAAACTTTTCCATCACAGA 542 81 1323 Antisense
GAGCACTACTGAGCCATATCATATT 8 391 1374 Antisense
Sequence Source Affymetrix Proprietary Database