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[179878_at]

Description T20H9.5 /REP_DB=WormBase Gene ID /WP=CE13864 /TR=O44891 /GB=AAB95055.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 18.5
(-1.3)
A 		7.3
(-2.5)
A 		2.1
(-3)
A 		59.2
(3)
A 		57
B 15.2
(-1.6)
A 		6
(-3)
A 		29.7
(0.5)
A 		46.2
(3)
A 		40
C 13.4
(-1.6)
A 		6.1
(-2.8)
A 		4.7
(-3)
A 		41.1
(3)
A 		36
avr 15.7
(-1.7) 		6.5
(-3) 		12.2
(-2.2) 		48.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 25.5
(3)
A 		3
(-2.8)
A 		2.1
(-3)
A 		16.9
(0.8)
A 		6.3
(-1.9)
A 		3.4
(-2.7)
A 		23
B 2.3
(-2.5)
A 		5
(-0.7)
A 		10.7
(3)
A 		1.5
(-3)
A 		4
(-1.4)
A 		3.3
(-1.8)
A 		9
C 6.6
(0.6)
A 		3.3
(-3)
A 		4
(-2.2)
A 		5.2
(-0.9)
A 		8.8
(3)
A 		4.1
(-2.1)
A 		6
avr 11.5
(3) 		3.8
(-2.8) 		5.6
(-1.5) 		7.9
(0.3) 		6.4
(-0.9) 		3.6
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.7
(1.5)
A 		1.6
(-2.3)
A 		0.6
(-3)
A 		8.7
(3)
A 		8
B 4.9
(-0.5)
A 		1.5
(-3)
A 		6.9
(0.9)
A 		9.8
(3)
A 		8
C 4.5
(0.3)
A 		1.8
(-2.8)
A 		1.6
(-3)
A 		6.9
(3)
A 		5
avr 5.4
(0.3) 		1.6
(-3) 		3
(-1.8) 		8.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.7
(3)
A 		1.1
(-2.1)
A 		0.5
(-3)
A 		4.3
(2.4)
A 		1.9
(-1)
A 		0.8
(-2.6)
A 		4
B 0.8
(-1.9)
A 		1.7
(0.5)
A 		2.6
(3)
A 		0.4
(-3)
A 		1.6
(0.3)
A 		1.2
(-0.8)
A 		2
C 2.5
(1.7)
A 		1
(-3)
A 		1
(-3)
A 		1.1
(-2.7)
A 		2.9
(3)
A 		1.4
(-1.7)
A 		2
avr 2.7
(3) 		1.3
(-2.3) 		1.4
(-1.9) 		1.9
(-0) 		2.1
(0.8) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8283
Sequence Type Exemplar sequence
Representative Public ID T20H9.5 NCBI
Target Description T20H9.5 /REP_DB=WormBase Gene ID /WP=CE13864 /TR=O44891 /GB=AAB95055.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065123 NCBI Caenorhabditis elegans T20H9.5 (T20H9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000029862 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2251945:2252977:1 10/11 None
T20H9.5 ENSEMBL cdna:known chromosome:CEL140:III:2251945:2252977:1 gene:T20H9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029856 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2251944-2252977(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20H9.5
Entrez Gene 188668 Entrez gene
SwissProt O44891 EMBL-EBI
WormBase CE13864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95055 Hypothetical protein T20H9.5 [Caenorhabditis elegans] ref|NP_497524.1| T20H9.5 [Caenorhabditis elegans] 1.0E-131
blast AAB95055 Hypothetical protein T20H9.5 [Caenorhabditis elegans] ref|NP_497524.1| T20H9.5 [Caenorhabditis elegans] 1.0E-124
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 8.0E-42
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 6.0E-40
blast AAK29865 Hypothetical protein Y22D7AR.11 [Caenorhabditis elegans] ref|NP_497448.1| Y22D7AR.11 [Caenorhabditis elegans] 2.0E-32
blast AAK66040 Hypothetical protein Y82E9BL.16 [Caenorhabditis elegans] ref|NP_497380.1| Y82E9BL.16 [Caenorhabditis elegans] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-48
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.9E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.5E-48
Sequence
Target Sequence 
>C. ELEGANS:179878_AT
caattcgctttgactatgttacatgttacatgtcggataacgcatttgacattaatttga
acggtatatcgatccgctacactgatgcagttagaaaaatatcactttggaaaaacaact
tcgacgatcttatttctattctgtcttattttgacccacaagtgctcgaagaaatcgagt
tgacttatacttactcggatgaccaattcgaacggattgctgagctagatcaatggaaaa
atgctaaacacttcgaaatgggacctactgaccgtcaactaggttttcccattgcaaaaa
ttgaaatcttttttcattttcaaagtttcaatatagcaatcgccaacttttcagtagaaa
gtgcaattctaattagagatgacttgatgaaaagaagtgcgttccagaaatgccgtattg
atgtttttgaaggagggaattatgacacatgcgaaattataagagtattcaaaccgaact
ttacaagccacacatttcgtggaacaatacaatggtctagcggtaacgacgaatttgaaa
tttatgtggatgctgatcgtgattctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCGCTTTGACTATGTTACATG 68 181 158 Antisense
TATCGATCCGCTACACTGATGCAGT 21 659 224 Antisense
ACGATCTTATTTCTATTCTGTCTTA 529 93 281 Antisense
GTCTTATTTTGACCCACAAGTGCTC 322 469 300 Antisense
GTTGACTTATACTTACTCGGATGAC 669 437 336 Antisense
GAAATGGGACCTACTGACCGTCAAC 32 361 412 Antisense
CGTCAACTAGGTTTTCCCATTGCAA 171 245 430 Antisense
TATAGCAATCGCCAACTTTTCAGTA 647 659 489 Antisense
GAAGTGCGTTCCAGAAATGCCGTAT 397 285 551 Antisense
GAACTTTACAAGCCACACATTTCGT 246 349 633 Antisense
TGTGGATGCTGATCGTGATTCTCTC 473 555 702 Antisense
Sequence Source Affymetrix Proprietary Database