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[179877_at]

Description T12B5.7 /REP_DB=WormBase Gene ID /WP=CE20065 /TR=Q9TZ29 /GB=AAC68932.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 5.7
(-2)
A 		4
(-2.4)
A 		0.9
(-3)
A 		30.7
(3)
A 		30
B 12.6
(3)
A 		10.1
(1.6)
A 		1.7
(-3)
A 		5.7
(-0.8)
A 		11
C 5.3
(-2.3)
A 		9
(-1.5)
A 		2.3
(-3)
A 		28.5
(3)
A 		26
avr 7.9
(-1.1) 		7.7
(-1.2) 		1.6
(-3) 		21.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 8
(-1.8)
A 		1.6
(-2.8)
A 		37.6
(3)
A 		1.7
(-2.8)
A 		0.5
(-3)
A 		1.7
(-2.8)
A 		37
B 2.5
(-2.3)
A 		19.6
(3)
A 		16.8
(2.1)
A 		8.9
(-0.3)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		19
C 1.9
(-2.8)
A 		13.9
(2.9)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		2.4
(-2.6)
A 		14.1
(3)
A 		13
avr 4.1
(-2) 		11.7
(0.6) 		18.7
(3) 		4
(-2) 		1.1
(-3) 		5.5
(-1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.1
(-0.3)
A 		0.9
(-2)
A 		0.2
(-3)
A 		4.5
(3)
A 		4
B 4
(3)
A 		2.5
(0.5)
A 		0.4
(-3)
A 		1.2
(-1.7)
A 		4
C 1.8
(-1.5)
A 		2.6
(-0.3)
A 		0.8
(-3)
A 		4.8
(3)
A 		4
avr 2.6
(1.2) 		2
(0) 		0.5
(-3) 		3.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-2)
A 		0.6
(-2.7)
A 		8.2
(3)
A 		0.4
(-2.9)
A 		0.2
(-3)
A 		0.4
(-2.9)
A 		8
B 0.9
(-2.3)
A 		6.5
(3)
A 		4.1
(0.8)
A 		2.4
(-0.8)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		6
C 0.7
(-2.5)
A 		4.2
(2.3)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		0.8
(-2.3)
A 		4.7
(3)
A 		4
avr 1
(-2.1) 		3.8
(2.4) 		4.2
(3) 		1
(-2.1) 		0.4
(-3) 		1.8
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8289
Sequence Type Exemplar sequence
Representative Public ID T12B5.7 NCBI
Target Description T12B5.7 /REP_DB=WormBase Gene ID /WP=CE20065 /TR=Q9TZ29 /GB=AAC68932.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064896 NCBI Caenorhabditis elegans T12B5.7 (T12B5.7) mRNA, complete cds. 11/11 None
T12B5.7 ENSEMBL cdna:known chromosome:CEL140:III:937289:938048:-1 gene:T12B5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007697 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:937288-938048(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12B5.7
Entrez Gene 188446 Entrez gene
SwissProt Q9TZ29 EMBL-EBI
WormBase CE20065 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68932 Hypothetical protein T12B5.7 [Caenorhabditis elegans] ref|NP_497297.1| T12B5.7 [Caenorhabditis elegans] 1.0E-118
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 1.0E-51
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 4.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.8E-4
Sequence
Target Sequence 
>C. ELEGANS:179877_AT
tgctcgtattgcataagacaccaatagaggaaattttccaaaaactgagagcgagaaaag
tctgtcgcagtttgagaactgctgtcgacaaatttggaatacattttggttgcatcggtt
tgatcttggggaaagatgtagtcaatatatgttggaatggaattgacgttgaagagattg
aagatgtatttatgtctcaatacgaatacatcagatatactgaagcagcaaatggcagta
cgaacatgattcacaatggacatgaaaagttaatcgatggagaaaactttgtggaaagag
cgggcaaggattttaaaatagtatcgaagcacgcacagaaaattgaaattttcaattcaa
atgatgacaacattgttacaactttgaatgagtttttgaaattcgaaacatgtattctcg
tgaaggatgtaaaattatggaacttatctcttgatgatgttcttacgaatcttccacgtt
ttaatgctaaagaactcaaaactattaaattggaatgggtgaatacaatgattgtatatt
ttttccatttcaaatgtttcaatattcaccaggttgacgaatttccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCGTATTGCATAAGACACCAAT 656 575 14 Antisense
TTGGAATACATTTTGGTTGCATCGG 451 709 107 Antisense
GGTTGCATCGGTTTGATCTTGGGGA 447 507 121 Antisense
GGCAGTACGAACATGATTCACAATG 137 537 247 Antisense
AAATTCGAAACATGTATTCTCGTGA 88 115 412 Antisense
ATGGAACTTATCTCTTGATGATGTT 201 53 450 Antisense
GATGATGTTCTTACGAATCTTCCAC 110 411 466 Antisense
CTTACGAATCTTCCACGTTTTAATG 111 221 475 Antisense
ATGATTGTATATTTTTTCCATTTCA 212 47 541 Antisense
CAAATGTTTCAATATTCACCAGGTT 101 193 564 Antisense
TCACCAGGTTGACGAATTTCCAGAA 509 625 579 Antisense
Sequence Source Affymetrix Proprietary Database