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[179874_at]

Description F36G9.10 /REP_DB=WormBase Gene ID /WP=CE15987 /TR=O45479 /GB=CAB04340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 28      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 38
(3)
A 		31.4
(1.9)
A 		2.9
(-3)
A 		35.2
(2.5)
A 		35
B 27.6
(-0.3)
A 		55.4
(3)
A 		4.1
(-3)
A 		45
(1.8)
A 		51
C 29.8
(0.3)
A 		5
(-3)
A 		6.2
(-2.8)
A 		50.3
(3)
A 		45
avr 31.8
(1.2) 		30.6
(1) 		4.4
(-3) 		43.5
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 45.2
(3)
A 		3.3
(-3)
A 		5.2
(-2.7)
A 		5.3
(-2.7)
A 		31.4
(1)
A 		10.2
(-2)
A 		42
B 4.2
(-2.7)
A 		5.7
(-1.7)
A 		3.8
(-3)
A 		5.6
(-1.8)
A 		12
(2.4)
A 		12.9
(3)
A 		9
C 2.2
(-3)
A 		5.7
(-1.6)
A 		17.2
(3)
A 		14.8
(2)
A 		15.3
(2.2)
A 		3.7
(-2.4)
A 		15
avr 17.2
(2) 		4.9
(-3) 		8.7
(-1.4) 		8.6
(-1.5) 		19.6
(3) 		8.9
(-1.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.8
(3)
A 		6.8
(-0.2)
A 		0.8
(-3)
A 		5.2
(-1)
A 		13
B 8.8
(0.7)
A 		13.7
(3)
A 		1
(-3)
A 		9.6
(1.1)
A 		13
C 9.9
(3)
A 		1.4
(-3)
A 		2.2
(-2.4)
A 		8.5
(2)
A 		9
avr 10.8
(3) 		7.3
(0.8) 		1.3
(-3) 		7.8
(1.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.3
(2.1)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		9.5
(3)
A 		2.5
(-2)
A 		8
B 1.5
(-2.1)
A 		1.9
(-1.5)
A 		0.9
(-3)
A 		1.5
(-2.1)
A 		4.9
(3)
A 		4.8
(2.9)
A 		4
C 0.8
(-3)
A 		1.7
(-1.7)
A 		4.4
(2.1)
A 		3
(0.1)
A 		5
(3)
A 		1.2
(-2.4)
A 		4
avr 3.5
(-0.7) 		1.6
(-3) 		2.1
(-2.4) 		1.9
(-2.6) 		6.5
(3) 		2.8
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13574
Sequence Type Exemplar sequence
Representative Public ID F36G9.10 NCBI
Target Description F36G9.10 /REP_DB=WormBase Gene ID /WP=CE15987 /TR=O45479 /GB=CAB04340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F36G9.10 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15964671:15965815:-1 gene:F36G9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043440 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15964670-15965815(-) 100.0 100.0
Public Domain and Genome References
Ensembl F36G9.10
Sequence
Target Sequence 
>C. ELEGANS:179874_AT
gaagttgctccaagctggtacctacgaagtatgcacttcaccgcgattgttacaactccg
gtaaacattttcgggattttcgtaatcctattttgccaaacaagacaactctcctcattc
cgttggcatttacttgcttatcagatttgctcaatgtccacggatttctcattatcatca
ggaataatgcctgtaatattttcaccatttccaatgggtcagcctcacgaactatttaca
acgctttttcaacttctagggtttgagacaagtaccaaaattcaatgtataacaactccg
atattggtattttatgctccgattttagtagtcgttggtacaatcatgttcaacgttccc
aatagccaattatcatttttcatctcggcgatttgtctatcgtgtcacacattttttggt
actttaagcatgatgtatttcaatcgggtctatcgtgaatggataattggtacaattaaa
aatcgatcgcttacgacttcagtaccaagctcaaagttcctgcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTGCTCCAAGCTGGTACCTAC 436 337 22 Antisense
TTCACCGCGATTGTTACAACTCCGG 236 687 58 Antisense
GCCAAACAAGACAACTCTCCTCATT 650 277 116 Antisense
TCCTCATTCCGTTGGCATTTACTTG 2 593 133 Antisense
TGTCCACGGATTTCTCATTATCATC 496 557 176 Antisense
GTCAGCCTCACGAACTATTTACAAC 141 467 239 Antisense
TACAACGCTTTTTCAACTTCTAGGG 520 641 258 Antisense
GGTACAATCATGTTCAACGTTCCCA 5 505 358 Antisense
CCAATTATCATTTTTCATCTCGGCG 136 277 387 Antisense
ATCGATCGCTTACGACTTCAGTACC 147 35 503 Antisense
TACCAAGCTCAAAGTTCCTGCATGC 69 651 524 Antisense
Sequence Source Affymetrix Proprietary Database