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[179873_at]

Description T20H9.6 /REP_DB=WormBase Gene ID /WP=CE13866 /TR=O44893 /GB=AAB95054.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 2.7
(-3)
A 		29.4
(-1)
A 		11.8
(-2.3)
A 		81.4
(3)
A 		79
B 1.4
(-3)
A 		5
(-2.4)
A 		37.3
(3)
A 		7.5
(-2)
A 		36
C 20.9
(-1.8)
A 		51.3
(3)
A 		13.2
(-3)
A 		50.7
(2.9)
A 		38
avr 8.3
(-3) 		28.6
(0.2) 		20.8
(-1) 		46.5
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 34.6
(3)
A 		15.7
(-0.6)
A 		4.7
(-2.8)
A 		14
(-1)
A 		3.4
(-3)
A 		24.7
(1.1)
A 		31
B 7.2
(-1.4)
A 		10.7
(-0.5)
A 		24.2
(3)
A 		7.7
(-1.3)
A 		1.1
(-3)
A 		22.8
(2.6)
A 		23
C 5.3
(-3)
A 		55.1
(3)
A 		5.6
(-3)
A 		28.1
(-0.3)
A 		17.5
(-1.5)
A 		20.4
(-1.2)
A 		50
avr 15.7
(-0.5) 		27.2
(3) 		11.5
(-1.7) 		16.6
(-0.2) 		7.3
(-3) 		22.6
(1.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1
(-3)
A 		6.4
(-0)
A 		3.1
(-1.8)
A 		11.9
(3)
A 		11
B 0.4
(-3)
A 		1.2
(-2.4)
A 		8.6
(3)
A 		1.6
(-2.1)
A 		8
C 6.9
(-1.6)
A 		14.7
(3)
A 		4.6
(-3)
A 		8.6
(-0.6)
A 		10
avr 2.8
(-3) 		7.4
(3) 		5.4
(0.4) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.4
(3)
A 		5.6
(2.1)
A 		1
(-3)
A 		3.5
(-0.2)
A 		1
(-3)
A 		6
(2.6)
A 		5
B 2.5
(-1.5)
A 		3.6
(-0.7)
A 		5.9
(1.1)
A 		2
(-1.9)
A 		0.5
(-3)
A 		8.5
(3)
A 		8
C 2
(-2.8)
A 		16.8
(3)
A 		1.4
(-3)
A 		5.7
(-1.3)
A 		5.7
(-1.3)
A 		6.8
(-0.9)
A 		15
avr 3.6
(-1.9) 		8.7
(3) 		2.8
(-2.6) 		3.7
(-1.8) 		2.4
(-3) 		7.1
(1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8345
Sequence Type Exemplar sequence
Representative Public ID T20H9.6 NCBI
Target Description T20H9.6 /REP_DB=WormBase Gene ID /WP=CE13866 /TR=O44893 /GB=AAB95054.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065121 NCBI Caenorhabditis elegans T20H9.6 (T20H9.6) mRNA, complete cds. 11/11 None
GENEFINDER00000029860 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2246184:2249392:1 11/11 None
SNAP00000029854 ENSEMBL cdna:SNAP chromosome:CEL140:III:2248301:2249392:1 11/11 None
T20H9.6 ENSEMBL cdna:known chromosome:CEL140:III:2246456:2249519:1 gene:T20H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2246455-2249519(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20H9.6
Entrez Gene 188669 Entrez gene
SwissProt O44893 EMBL-EBI
WormBase CE13866 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95054 Hypothetical protein T20H9.6 [Caenorhabditis elegans] ref|NP_497522.1| T20H9.6 [Caenorhabditis elegans] 0.0
blast AAB95054 Hypothetical protein T20H9.6 [Caenorhabditis elegans] ref|NP_497522.1| T20H9.6 [Caenorhabditis elegans] 1.0E-109
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 4.0E-66
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 9.0E-28
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 9.0E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497522.1 2 12-29,693-715
T20H9.6 2 12-29,693-715
GENEFINDER00000029860 1 705-727
SNAP00000029854 1 211-233
Sequence
Target Sequence 
>C. ELEGANS:179873_AT
cagccttttcagccaacttattagattatggtggagtttttatacaagcaacaaagatca
aaggaattgcaattgattgcccggcatttattgcttcattggaaaagctgaaaaatattc
tagcatcttggtttttttcaaaactctccatagatcaattggataaaattatgatcagtc
ttgaatttcaccttgatttctccaagttctcaaaggcgctcaatggctcagccgaatcgt
tgcaagcacttgaaatgcattttgccaagtataaggacacattgaaaaaagctaaaaatg
gaacggcttcatcattttcgcaacctcaaagcggagcaggttttatggaaaaaggctctc
cttattcctacattggtttatcgatgatagtctttattattgtatgtgtaattctgtttg
tggcatggaaagtttacgacgcttcatctgatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCCTTTTCAGCCAACTTATTAGA 472 201 1730 Antisense
GATTGCCCGGCATTTATTGCTTCAT 397 433 1804 Antisense
ATATTCTAGCATCTTGGTTTTTTTC 517 19 1844 Antisense
GATCAGTCTTGAATTTCACCTTGAT 280 421 1902 Antisense
ATTTCTCCAAGTTCTCAAAGGCGCT 629 15 1925 Antisense
CAAAGGCGCTCAATGGCTCAGCCGA 253 193 1940 Antisense
GGCTCAGCCGAATCGTTGCAAGCAC 251 539 1954 Antisense
TGGAACGGCTTCATCATTTTCGCAA 574 547 2028 Antisense
ATTTTCGCAACCTCAAAGCGGAGCA 456 13 2043 Antisense
AAAAAGGCTCTCCTTATTCCTACAT 124 129 2078 Antisense
AGTTTACGACGCTTCATCTGATGAT 501 63 2160 Antisense
Sequence Source Affymetrix Proprietary Database