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[179872_at]

Description R10E11.9 /REP_DB=WormBase Gene ID /WP=CE12702 /TR=P90945 /GB=CAA82356.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 23.6
(-1)
A 		25.7
(-0.8)
A 		6.1
(-3)
A 		59.2
(3)
A 		53
B 7
(-3)
A 		46.5
(2.6)
A 		32.7
(0.7)
A 		49.2
(3)
A 		42
C 13
(-3)
A 		18
(-2)
A 		35.2
(1.3)
P 		44.3
(3)
A 		31
avr 14.5
(-3) 		30.1
(-0.4) 		24.7
(-1.3) 		50.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 31.7
(2.1)
A 		19.8
(-0.2)
A 		16.7
(-0.8)
A 		34.2
(2.6)
A 		36.3
(3)
A 		5.7
(-3)
A 		31
B 30.5
(1.4)
A 		39.4
(2.8)
A 		1.8
(-3)
A 		37.8
(2.6)
A 		40.7
(3)
A 		37.6
(2.5)
A 		39
C 26.4
(-2.9)
A 		31.1
(-2.4)
A 		25.8
(-3)
A 		77.1
(3)
A 		46.3
(-0.6)
A 		36.5
(-1.7)
A 		51
avr 29.5
(-0.5) 		30.1
(-0.4) 		14.8
(-3) 		49.7
(3) 		41.1
(1.5) 		26.6
(-1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(2.9)
A 		5.6
(0.4)
A 		1.6
(-3)
A 		8.7
(3)
A 		7
B 2.2
(-3)
A 		11.5
(3)
A 		7.6
(0.5)
A 		10.5
(2.4)
A 		9
C 4.3
(-3)
A 		5.2
(-2.3)
A 		12.3
(3)
P 		7.5
(-0.6)
A 		8
avr 5
(-3) 		7.4
(0.7) 		7.2
(0.4) 		8.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.8
(-0.3)
A 		7.1
(0.6)
A 		3.6
(-1.6)
A 		8.7
(1.6)
A 		11
(3)
A 		1.4
(-3)
A 		10
B 10.6
(0.8)
A 		13.1
(1.7)
A 		0.4
(-3)
A 		10
(0.6)
A 		16.6
(3)
A 		14
(2)
A 		16
C 9.8
(-0.8)
A 		9.5
(-1)
A 		6.6
(-3)
A 		15.5
(3)
A 		15
(2.7)
A 		12.2
(0.8)
A 		9
avr 8.7
(-0.1) 		9.9
(0.6) 		3.5
(-3) 		11.4
(1.4) 		14.2
(3) 		9.2
(0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7305
Sequence Type Exemplar sequence
Representative Public ID R10E11.9 NCBI
Target Description R10E11.9 /REP_DB=WormBase Gene ID /WP=CE12702 /TR=P90945 /GB=CAA82356.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066768(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066768 NCBI Caenorhabditis elegans R10E11.9 (R10E11.9) mRNA, complete cds. 9/11 None
GENEFINDER00000016251 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9792481:9793453:-1 9/11 None
R10E11.9 ENSEMBL cdna:known chromosome:CEL140:III:9792481:9793144:-1 gene:R10E11.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016244 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9792476-9793141(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E11.9
Entrez Gene 187781 Entrez gene
SwissProt P90945 EMBL-EBI
WormBase CE33683 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82356 Hypothetical protein R10E11.9 [Caenorhabditis elegans] ref|NP_499169.2| R10E11.9 [Caenorhabditis elegans] 2.0E-42
blast CAA82356 Hypothetical protein R10E11.9 [Caenorhabditis elegans] ref|NP_499169.2| R10E11.9 [Caenorhabditis elegans] 3.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499169.2 1 32-54
R10E11.9 1 32-54
GENEFINDER00000016251 1 75-97
Sequence
Target Sequence 
>C. ELEGANS:179872_AT
tggtattttaactcaccacgacctgctccaatgtaagaggtgtccaactgcttctttctt
cacatattatgaatgttgtggagagttcttggaaaactgttgttggagatttagacaaga
acccataataatcggagtaattcttcttgttcttctcttacttgtatgttgctgttgttg
tgtttcttggatattcgttggaagaaaaaagaaatcttcaaatattgaaccagaaaagaa
gccaacaaagaaagactcacaaattcaaacaattagcagttcaacaatagattctggaac
tcaatgggaactccgaagaagctacgaggaaactgataaaagaaggtcttatgcagctgc
tag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTATTTTAACTCACCACGACCTG 169 551 36 Antisense
ACCACGACCTGCTCCAATGTAAGAG 681 85 50 Antisense
GTAAGAGGTGTCCAACTGCTTCTTT 562 461 68 Antisense
AACTGCTTCTTTCTTCACATATTAT 220 143 81 Antisense
TCGGAGTAATTCTTCTTGTTCTTCT 178 607 167 Antisense
CTTGTTCTTCTCTTACTTGTATGTT 222 219 181 Antisense
GTATGTTGCTGTTGTTGTGTTTCTT 682 455 199 Antisense
GTTGTGTTTCTTGGATATTCGTTGG 404 437 212 Antisense
GATTCTGGAACTCAATGGGAACTCC 574 431 325 Antisense
GGGAACTCCGAAGAAGCTACGAGGA 345 493 341 Antisense
AAAGAAGGTCTTATGCAGCTGCTAG 593 123 374 Antisense
Sequence Source Affymetrix Proprietary Database