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[179870_at]

Description ZC204.8 /REP_DB=WormBase Gene ID /WP=CE15098 /TR=P91538 /GB=AAB37917.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 13.7
(-3)
A 		16.6
(-2.8)
A 		18
(-2.7)
A 		90
(3)
A 		76
B 47.9
(1.9)
A 		12.8
(-2.5)
A 		8.7
(-3)
A 		57
(3)
A 		48
C 31.5
(-0.7)
A 		52.2
(1.3)
A 		7
(-3)
A 		70.5
(3)
A 		64
avr 31
(-1.1) 		27.2
(-1.4) 		11.2
(-3) 		72.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10.7
(-2.7)
A 		20.3
(-0.5)
A 		35.4
(3)
A 		18.2
(-1)
A 		9.3
(-3)
A 		12.8
(-2.2)
A 		26
B 29.3
(2)
A 		13.5
(-2.9)
A 		19
(-1.2)
A 		32.4
(3)
A 		13.1
(-3)
A 		27.4
(1.4)
A 		19
C 42.9
(0.4)
A 		62.8
(3)
A 		37.4
(-0.3)
A 		16.4
(-3)
A 		42.1
(0.3)
A 		17.7
(-2.8)
A 		46
avr 27.6
(0.9) 		32.2
(3) 		30.6
(2.3) 		22.3
(-1.6) 		21.5
(-2) 		19.3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5
(-2.1)
A 		3.6
(-3)
A 		4.7
(-2.3)
A 		13.2
(3)
A 		10
B 15.3
(3)
A 		3.2
(-2.5)
A 		2
(-3)
A 		12.1
(1.6)
A 		13
C 10.4
(0.8)
A 		15
(3)
A 		2.5
(-3)
A 		11.9
(1.5)
A 		13
avr 10.2
(1.6) 		7.3
(-0.3) 		3.1
(-3) 		12.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2
(-3)
A 		7.2
(2.5)
A 		7.7
(3)
A 		4.6
(-0.3)
A 		2.8
(-2.2)
A 		3.1
(-1.8)
A 		6
B 10.2
(3)
A 		4.5
(-3)
A 		4.6
(-2.9)
A 		8.6
(1.3)
A 		5.3
(-2.2)
A 		10.2
(3)
A 		6
C 15.9
(1.8)
A 		19.1
(3)
A 		9.5
(-0.6)
A 		3.3
(-3)
A 		13.6
(0.9)
A 		5.9
(-2)
A 		16
avr 9.4
(1.9) 		10.3
(3) 		7.3
(-0.8) 		5.5
(-3) 		7.2
(-0.9) 		6.4
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5750
Sequence Type Exemplar sequence
Representative Public ID ZC204.8 NCBI
Target Description ZC204.8 /REP_DB=WormBase Gene ID /WP=CE15098 /TR=P91538 /GB=AAB37917.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061622 NCBI Caenorhabditis elegans ZC204.8 (ZC204.8) mRNA, complete cds. 11/11 None
ZC204.8 ENSEMBL cdna:known chromosome:CEL140:II:1645462:1648868:-1 gene:ZC204.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031407 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031430 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1645460-1648867(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.8
Entrez Gene 191112 Entrez gene
SwissProt P91538 EMBL-EBI
WormBase CE15098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 0.0
blast AAC71169 Hypothetical protein W08F4.2 [Caenorhabditis elegans] ref|NP_493764.1| W08F4.2 [Caenorhabditis elegans] 4.0E-44
blast AAF39821 Hypothetical protein F45D11.13 [Caenorhabditis elegans] ref|NP_493881.2| F45D11.13 [Caenorhabditis elegans] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.6E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.7E-6
Sequence
Target Sequence 
>C. ELEGANS:179870_AT
gatcgatgccccgtttggaatgtttcgagctctggtttcctacacttgaacaagagcgac
ttgtcgagaaggaacttttccaggggatcaagtatactattcaggaagctgtgcaacggg
gaaaaagattcgaaattgagagacttgctgatgggacgaaagcaatcgtcacgtttgata
cactcttttatcccgagaacaccgactacaccgaaggacaaggatgcttcgggcatagca
tcaaatgcaccagtcagccattgacattcatcaccaattggtggaacaatactagtatca
ggcaaacttatctagacatacatacccagaataccactttttacaccgacactgtgatgc
acagcgacaagtcaaccttcggacaccacctcgacctcttctcgttcctcgatttcagat
gcggctaccaaaacgagtggtacatttacaagatgccatacagcctctcgatcatcacta
cggcaaatcaacgcgttaacaatgccgatcttccgccagagagtttgcctgctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGATGCCCCGTTTGGAATGTTT 603 417 1370 Antisense
GCAATCGTCACGTTTGATACACTCT 564 321 1531 Antisense
TTTATCCCGAGAACACCGACTACAC 353 671 1556 Antisense
GTCAGCCATTGACATTCATCACCAA 664 465 1622 Antisense
TACCACTTTTTACACCGACACTGTG 220 649 1701 Antisense
CAGCGACAAGTCAACCTTCGGACAC 433 203 1731 Antisense
CTCGTTCCTCGATTTCAGATGCGGC 360 231 1770 Antisense
TTACAAGATGCCATACAGCCTCTCG 26 685 1815 Antisense
GCCTCTCGATCATCACTACGGCAAA 470 281 1832 Antisense
AACGCGTTAACAATGCCGATCTTCC 261 145 1859 Antisense
TTCCGCCAGAGAGTTTGCCTGCTAA 93 695 1880 Antisense
Sequence Source Affymetrix Proprietary Database