[Home] | [Total List]

[179868_at]

Description Y81G3A.4 /REP_DB=WormBase Gene ID /WP=CE23119 /TR=Q9XVY2 /GB=CAA22517.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      6grp_total > 80      4grp_total > 49      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 25.9
(-3)
A 		198.6
(3)
P 		159.5
(1.6)
P 		73.3
(-1.4)
P 		173
B 31.1
(-3)
A 		158.6
(2.2)
P 		177.8
(3)
P 		56
(-2)
A 		147
C 35.3
(-2.4)
A 		195
(3)
P 		161.1
(1.8)
P 		18.2
(-3)
A 		177
avr 30.8
(-3) 		184.1
(3) 		166.1
(2.3) 		49.2
(-2.3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 53.2
(-3)
P 		118.7
(-0.1)
P 		116.5
(-0.2)
P 		189.7
(3)
P 		142.7
(0.9)
P 		135.1
(0.6)
P 		137
B 80.2
(-0.8)
M 		121.1
(3)
P 		56
(-3)
P 		114.8
(2.4)
P 		100.2
(1.1)
P 		69.9
(-1.7)
P 		65
C 57
(-3)
A 		128.3
(0.4)
P 		97.4
(-1.1)
P 		184
(3)
P 		88.7
(-1.5)
P 		99.4
(-1)
P 		127
avr 63.5
(-3) 		122.7
(0.6) 		90
(-1.4) 		162.8
(3) 		110.5
(-0.2) 		101.5
(-0.7) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 9.4
(-3)
A 		43.1
(3)
P 		41.7
(2.8)
P 		10.7
(-2.8)
P 		34
B 9.9
(-3)
A 		39.2
(2.6)
P 		41.2
(3)
P 		11.9
(-2.6)
A 		31
C 11.7
(-2)
A 		56.1
(3)
P 		56.1
(3)
P 		3.1
(-3)
A 		53
avr 10.3
(-2.7) 		46.1
(3) 		46.3
(3) 		8.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 9.8
(-3)
P 		42.2
(2.1)
P 		25.4
(-0.6)
P 		48.1
(3)
P 		43.1
(2.2)
P 		32.9
(0.6)
P 		38
B 27.9
(0.2)
M 		40.3
(2.9)
P 		13.6
(-3)
P 		30.4
(0.7)
P 		40.7
(3)
P 		26.1
(-0.2)
P 		27
C 21.1
(-3)
A 		39.2
(3)
P 		24.8
(-1.8)
P 		37
(2.3)
P 		28.7
(-0.5)
P 		33.3
(1)
P 		18
avr 19.6
(-3) 		40.6
(3) 		21.3
(-2.5) 		38.5
(2.4) 		37.5
(2.1) 		30.8
(0.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3457
Sequence Type Exemplar sequence
Representative Public ID Y81G3A.4 NCBI
Target Description Y81G3A.4 /REP_DB=WormBase Gene ID /WP=CE23119 /TR=Q9XVY2 /GB=CAA22517.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064381 NCBI Caenorhabditis elegans Y81G3A.4 (Y81G3A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000006882 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13091676:13095097:1 11/11 None
Y81G3A.4 ENSEMBL cdna:known chromosome:CEL140:II:13091458:13094066:1 gene:Y81G3A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006874 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13091454-13094063(+) 96.94 100.0
Public Domain and Genome References
Gene Title
Ensembl Y81G3A.4
Entrez Gene 190748 Entrez gene
SwissProt Q9XVY2 EMBL-EBI
WormBase CE23119 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22517 Hypothetical protein Y81G3A.4 [Caenorhabditis elegans] ref|NP_496782.1| Y81G3A.4 [Caenorhabditis elegans] 1.0E-170
blast CAA22517 Hypothetical protein Y81G3A.4 [Caenorhabditis elegans] ref|NP_496782.1| Y81G3A.4 [Caenorhabditis elegans] 1.0E-133
blast CAE59422 Hypothetical protein CBG02791 [Caenorhabditis briggsae] 1.0E-132
blast CAE59422 Hypothetical protein CBG02791 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:179868_AT
tcaaccagtcgctctcagaattctacgattttccatttcatccggtggtgctcgagagct
cgtcgtttcagttgtattgtaagctttcggagcaaaaaacgaaatgtttcgcggaaaagt
gcaatgattatgccgccgaaaactcattttccccgtcgaattttgtgtgcattttcaaga
agagtctattcgaaaaagccctgaaatgtttggcaaaaacggagcccatcacattcttaa
aatgtgatcatgaatgccacgaggaaatcgttcgcactgaccatctcaaacaatcaactc
caaacaatcagaatcagatttttgtctcaacagagttggcaacatatgagactgaattgg
ataagctatgcaggtttcagacttgttacatgaattgtatggttccggtggtgaaagaga
tgtgtgacgatgaagaatcaaaatcagcaatcgaaatcgtcgaggcgtacgtccaatggc
acgccgatgatatttccgactggcattcgatcacagggaatgatgatacactaccaaaag
cctgtcattctctggtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCAGTCGCTCTCAGAATTCTA 353 631 245 Antisense
CTACGATTTTCCATTTCATCCGGTG 303 225 267 Antisense
GAGAGCTCGTCGTTTCAGTTGTATT 152 395 298 Antisense
TATGCCGCCGAAAACTCATTTTCCC 385 657 373 Antisense
CGAGGAAATCGTTCGCACTGACCAT 19 251 504 Antisense
GACCATCTCAAACAATCAACTCCAA 648 383 523 Antisense
GCTATGCAGGTTTCAGACTTGTTAC 346 303 609 Antisense
GAAATCGTCGAGGCGTACGTCCAAT 279 361 697 Antisense
ATGGCACGCCGATGATATTTCCGAC 283 51 720 Antisense
ATTTCCGACTGGCATTCGATCACAG 644 15 736 Antisense
CAAAAGCCTGTCATTCTCTGGTCAA 697 189 779 Antisense
Sequence Source Affymetrix Proprietary Database