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[179867_at]

Description Y75B8A.8 /REP_DB=WormBase Gene ID /WP=CE23020 /TR=Q9XW73 /GB=CAA22097.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 198.1
(1)
P 		144.8
(-2)
A 		126.3
(-3)
A 		234.1
(3)
P 		108
B 149.8
(0.5)
P 		102.8
(-3)
M 		123.3
(-1.5)
A 		184.3
(3)
P 		82
C 197.6
(3)
P 		180.5
(1.7)
A 		117.7
(-3)
A 		157.1
(-0)
P 		80
avr 181.8
(2.1) 		142.7
(-1.2) 		122.4
(-3) 		191.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 109
(3)
A 		48.6
(-3)
P 		61.7
(-1.7)
P 		57
(-2.2)
A 		89
(1)
A 		91.1
(1.2)
M 		60
B 103
(3)
A 		60.8
(-2.8)
A 		70.7
(-1.4)
M 		88.9
(1.1)
P 		59.1
(-3)
A 		96.2
(2.1)
P 		44
C 135.7
(3)
P 		107
(0.7)
A 		106.9
(0.7)
M 		71.3
(-2.2)
A 		61.8
(-3)
A 		79.2
(-1.6)
P 		74
avr 115.9
(3) 		72.1
(-2.7) 		79.8
(-1.7) 		72.4
(-2.7) 		70
(-3) 		88.8
(-0.5) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 72.1
(3)
P 		31.4
(-3)
A 		33
(-2.8)
A 		34.3
(-2.6)
P 		41
B 47.8
(3)
P 		25.4
(-3)
M 		28.6
(-2.1)
A 		39.3
(0.7)
P 		22
C 65.4
(3)
P 		51.9
(0.9)
A 		41
(-0.8)
A 		26.5
(-3)
P 		39
avr 61.8
(3) 		36.2
(-2.4) 		34.2
(-2.8) 		33.4
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 20.1
(0)
A 		17.3
(-1.3)
P 		13.4
(-3)
P 		14.5
(-2.5)
A 		26.8
(3)
A 		22.2
(0.9)
M 		13
B 35.8
(3)
A 		20.2
(-2)
A 		17.2
(-3)
M 		23.5
(-1)
P 		24
(-0.8)
A 		35.9
(3)
P 		19
C 50.3
(3)
P 		32.7
(0.1)
A 		27.2
(-0.9)
M 		14.3
(-3)
A 		20
(-2.1)
A 		26.5
(-1)
P 		36
avr 35.4
(3) 		23.4
(-1) 		19.3
(-2.4) 		17.4
(-3) 		23.6
(-0.9) 		28.2
(0.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7067
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.8 NCBI
Target Description Y75B8A.8 /REP_DB=WormBase Gene ID /WP=CE23020 /TR=Q9XW73 /GB=CAA22097.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067180 NCBI Caenorhabditis elegans Y75B8A.8 (Y75B8A.8) mRNA, complete cds. 11/11 None
SNAP00000020075 ENSEMBL cdna:SNAP chromosome:CEL140:III:12160763:12170692:1 11/11 None
GENEFINDER00000020165 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12164450:12170692:1 10/11 None
Y75B8A.8 ENSEMBL cdna:known chromosome:CEL140:III:12160763:12170822:1 gene:Y75B8A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020175 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12160758-12170688(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.8
Entrez Gene 190701 Entrez gene
SwissProt Q9XW73 EMBL-EBI
WormBase CE34135 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22097 Hypothetical protein Y75B8A.8 [Caenorhabditis elegans] ref|NP_499581.2| Y75B8A.8 [Caenorhabditis elegans] 0.0
blast CAE75095 Hypothetical protein CBG23017 [Caenorhabditis briggsae] 5.0E-45
blast CAE75095 Hypothetical protein CBG23017 [Caenorhabditis briggsae] 8.0E-45
Sequence
Target Sequence 
>C. ELEGANS:179867_AT
ggtatcactcaggctcattatcatcagtataagataaaaaccgtatttgactcgcgaaaa
ccatggatcgtaccaccaaaagctcgagaagagctctcgaatatttcccactggaatgtg
gatgagcactgtctcccatcgtgctccgctactccgttcatcattgtctgcatcaaatct
ccatcacttttagtcaatccactgcgtatttctcttccacgtacctacccaattgatccg
gccactgtacaatttgatcgaacattcccacaggactcggagcacggtccagtacttcag
aagctgtttgagaagaatctgggagccaagaccacggttcgaactatgactgattttgtg
gaagcctactgctcggcgtgtgaagaatatcagatttttatgccaaagtataataacgag
tcgtccccagagcaatcttcccaacccggatccgcacattcgtctcaacaacagaaaacg
cctgaaatggcttaccactcacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTATCACTCAGGCTCATTATCATC 409 505 151 Antisense
ATGTGGATGAGCACTGTCTCCCATC 519 49 266 Antisense
TCCGTTCATCATTGTCTGCATCAAA 408 595 303 Antisense
CTGCATCAAATCTCCATCACTTTTA 7 239 318 Antisense
TTAGTCAATCCACTGCGTATTTCTC 469 637 340 Antisense
TCCGGCCACTGTACAATTTGATCGA 221 595 387 Antisense
TGATCGAACATTCCCACAGGACTCG 4 567 405 Antisense
TCGGAGCACGGTCCAGTACTTCAGA 149 605 427 Antisense
GAGCCAAGACCACGGTTCGAACTAT 252 383 473 Antisense
TCCGCACATTCGTCTCAACAACAGA 52 597 601 Antisense
GCCTGAAATGGCTTACCACTCACGC 371 281 630 Antisense
Sequence Source Affymetrix Proprietary Database