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[179864_at]

Description Y41E3.13 /REP_DB=WormBase Gene ID /WP=CE18381 /TR=Q9U2H6 /GB=CAB63363.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 10      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 7.8
(-2.2)
A 		3.8
(-3)
A 		4.4
(-2.9)
A 		34.4
(3)
A 		31
B 7.7
(-2.9)
A 		28.3
(2.4)
A 		7.2
(-3)
A 		30.6
(3)
A 		23
C 6.3
(-2.8)
A 		3.6
(-3)
A 		18.5
(-1.9)
A 		81.5
(3)
A 		78
avr 7.3
(-3) 		11.9
(-2.3) 		10
(-2.6) 		48.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 33
(3)
A 		3.1
(-3)
A 		15.9
(-0.4)
A 		5
(-2.6)
A 		13.1
(-1)
A 		4.6
(-2.7)
A 		30
B 20.2
(3)
A 		12.8
(0.3)
A 		3.7
(-3)
A 		3.9
(-2.9)
A 		8.8
(-1.1)
A 		3.7
(-3)
A 		17
C 2.1
(-2.9)
A 		17.1
(1)
A 		5.2
(-2.1)
A 		3.8
(-2.5)
A 		1.9
(-3)
A 		24.9
(3)
A 		23
avr 18.4
(3) 		11
(-0.1) 		8.3
(-1.3) 		4.2
(-3) 		7.9
(-1.4) 		11.1
(-0.1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.8
(-0.1)
A 		0.8
(-3)
A 		1.1
(-2.6)
A 		5
(3)
A 		4
B 2.5
(-2.1)
A 		7
(3)
A 		1.7
(-3)
A 		6.5
(2.4)
A 		5
C 2.1
(-2.5)
A 		1
(-3)
A 		6.4
(-0.4)
A 		13.7
(3)
A 		13
avr 2.5
(-3) 		2.9
(-2.6) 		3.1
(-2.4) 		8.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.1
(3)
A 		1.1
(-3)
A 		3.5
(-0.1)
A 		1.3
(-2.8)
A 		4
(0.5)
A 		1.1
(-3)
A 		5
B 7
(3)
A 		4.3
(0.3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		3.6
(-0.3)
A 		1.4
(-2.5)
A 		6
C 0.8
(-2.8)
A 		5.2
(0.6)
A 		1.3
(-2.5)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		8.3
(3)
A 		8
avr 4.6
(3) 		3.5
(1.2) 		1.9
(-1.5) 		1
(-3) 		2.7
(-0.2) 		3.6
(1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9561
Sequence Type Exemplar sequence
Representative Public ID Y41E3.13 NCBI
Target Description Y41E3.13 /REP_DB=WormBase Gene ID /WP=CE18381 /TR=Q9U2H6 /GB=CAB63363.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070419 NCBI Caenorhabditis elegans Y41E3.13 (Y41E3.13) mRNA, complete cds. 11/11 None
Y41E3.13 ENSEMBL cdna:known chromosome:CEL140:IV:15057883:15058656:1 gene:Y41E3.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001448 8/11 Cross Hyb Matching Probes None
GENEFINDER00000001465 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15057888-15058662(+) 98.05 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.13
Entrez Gene 189833 Entrez gene
SwissProt Q9U2H6 EMBL-EBI
WormBase CE18381 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63363 Hypothetical protein Y41E3.13 [Caenorhabditis elegans] ref|NP_502820.1| Y41E3.13 [Caenorhabditis elegans] 1.0E-105
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 5.0E-55
blast T29366 hypothetical protein ZC404.5 - Caenorhabditis elegans 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:179864_AT
gagtaaacccaggaagtgctccggttccattatctcttccccacggaaataatcgactgc
gaagcgcagttacagatgcgcagtgtggagtgagcagtgctttgccgtttgagccgaagc
tcatagagggtgctcgtggagccggtgtattcttgaagttgcgttcgaacaacgtgggct
gggcgcagaacaagatgaatttgctggattttttatacaacaaagctgaaacattggagg
aaattggcgccctgaacaaaaacctacctgatgtaccaccgttaatcaagactattggtg
ttttcgtattcttcgtctcttctgctcatactgatggacaagcctaccacgctgctgatg
gtctttccccgtggactacaaaatcaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTAAACCCAGGAAGTGCTCCGGT 383 399 50 Antisense
CATTATCTCTTCCCCACGGAAATAA 503 215 77 Antisense
GAGTGAGCAGTGCTTTGCCGTTTGA 556 401 137 Antisense
GCCGAAGCTCATAGAGGGTGCTCGT 579 283 162 Antisense
CTCGTGGAGCCGGTGTATTCTTGAA 438 231 182 Antisense
CGTTCGAACAACGTGGGCTGGGCGC 99 247 211 Antisense
TGGCGCCCTGAACAAAAACCTACCT 44 537 294 Antisense
CAAAAACCTACCTGATGTACCACCG 256 191 306 Antisense
GTCTCTTCTGCTCATACTGATGGAC 602 469 364 Antisense
TACTGATGGACAAGCCTACCACGCT 298 647 378 Antisense
TTCCCCGTGGACTACAAAATCAGGC 86 697 414 Antisense
Sequence Source Affymetrix Proprietary Database