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[179862_at]

Description F54E2.2 /REP_DB=WormBase Gene ID /WP=CE17106 /TR=Q9TXK3 /GB=AAC78198.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 39.6
(-0.4)
A 		12.3
(-3)
A 		15.5
(-2.7)
A 		76.4
(3)
A 		64
B 22.4
(-3)
A 		28.9
(-2.3)
A 		47.9
(-0.1)
A 		75.9
(3)
A 		54
C 80.7
(3)
A 		31.4
(-1.2)
A 		9.7
(-3)
A 		27.7
(-1.5)
A 		71
avr 47.6
(0.9) 		24.2
(-3) 		24.4
(-3) 		60
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 75.6
(3)
A 		47.7
(0.5)
A 		57
(1.3)
A 		8.9
(-3)
A 		24.4
(-1.6)
A 		24.1
(-1.6)
A 		67
B 85.3
(3)
A 		25.3
(-1.7)
A 		49.7
(0.2)
A 		14.9
(-2.5)
A 		8.1
(-3)
A 		62.5
(1.2)
A 		77
C 58.9
(0.8)
A 		75
(2.1)
A 		12.9
(-3)
A 		85.5
(3)
A 		20.5
(-2.4)
A 		47.5
(-0.1)
A 		73
avr 73.3
(3) 		49.3
(0.4) 		39.9
(-0.6) 		36.4
(-1) 		17.7
(-3) 		44.7
(-0.1) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.4
(3)
A 		2.7
(-3)
A 		4.1
(-2.3)
A 		11.2
(1.4)
A 		12
B 7.1
(-3)
A 		7.1
(-3)
A 		11.1
(-0.4)
A 		16.2
(3)
A 		9
C 26.7
(3)
A 		9
(-1.6)
A 		3.4
(-3)
A 		4.7
(-2.7)
A 		23
avr 16.1
(3) 		6.3
(-2.9) 		6.2
(-3) 		10.7
(-0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.9
(1.7)
A 		17
(3)
A 		12.4
(1.1)
A 		2.3
(-3)
A 		7.4
(-0.9)
A 		5.9
(-1.5)
A 		15
B 29.7
(3)
A 		8.4
(-1.8)
A 		12.1
(-1)
A 		3.9
(-2.9)
A 		3.3
(-3)
A 		23.3
(1.5)
A 		26
C 21.8
(2.7)
A 		22.9
(3)
A 		3.3
(-3)
A 		17.2
(1.3)
A 		6.6
(-2)
A 		15.9
(0.9)
A 		20
avr 21.8
(3) 		16.1
(0.9) 		9.3
(-1.7) 		7.8
(-2.3) 		5.8
(-3) 		15
(0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15394
Sequence Type Exemplar sequence
Representative Public ID F54E2.2 NCBI
Target Description F54E2.2 /REP_DB=WormBase Gene ID /WP=CE17106 /TR=Q9TXK3 /GB=AAC78198.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071359 NCBI Caenorhabditis elegans F54E2.2 (F54E2.2) mRNA, complete cds. 11/11 None
SNAP00000004054 ENSEMBL cdna:SNAP chromosome:CEL140:V:2796125:2800997:1 11/11 None
GENEFINDER00000004061 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2796125:2796756:1 11/11 None
F54E2.2 ENSEMBL cdna:known chromosome:CEL140:V:2796125:2796837:1 gene:F54E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2796124-2796756(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54E2.2
Entrez Gene 178741 Entrez gene
SwissProt Q9TXK3 EMBL-EBI
WormBase CE17106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78198 Hypothetical protein F54E2.2 [Caenorhabditis elegans] ref|NP_503760.1| F54E2.2 [Caenorhabditis elegans] 1.0E-107
blast AAC78198 Hypothetical protein F54E2.2 [Caenorhabditis elegans] ref|NP_503760.1| F54E2.2 [Caenorhabditis elegans] 1.0E-105
blast CAE62260 Hypothetical protein CBG06319 [Caenorhabditis briggsae] 9.0E-87
blast CAE62260 Hypothetical protein CBG06319 [Caenorhabditis briggsae] 1.0E-84
blast CAE71866 Hypothetical protein CBG18914 [Caenorhabditis briggsae] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179862_AT
atcaccaaactgttctcctatttttcttctactccctgatatcctgttatcaacatcaac
ttcaccagtataaaatacctcgtcttcatcttccattcaccgatgagccaagatattatg
cagcagtagctgcggcgcctactaaacagaagactattcctctgtgtgaatattggaaga
ttttaggagtttacagagaggaatgtcaagaagacgagattctgatggatgattatcaat
ctaacaagcagcaagagtcatacgagattggtcttcctgtctgccgtttgaaatttttaa
ctgcctcctgcgtgaaatctgctaaatgtccatcgggaacggtttgccttgatttctcaa
cccaacgctgttgccacccgatgccaggaacatgcccaacacctactcagcttggttaca
aatgtatggtctacactccgatcagctggtgcacgacggatcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCAAACTGTTCTCCTATTTTT 344 27 17 Antisense
TTCTACTCCCTGATATCCTGTTATC 474 691 43 Antisense
ATAAAATACCTCGTCTTCATCTTCC 148 25 86 Antisense
GTCATACGAGATTGGTCTTCCTGTC 156 463 273 Antisense
TCTTCCTGTCTGCCGTTTGAAATTT 251 617 288 Antisense
TTGAAATTTTTAACTGCCTCCTGCG 123 705 304 Antisense
TGCCTCCTGCGTGAAATCTGCTAAA 607 585 318 Antisense
GGAACGGTTTGCCTTGATTTCTCAA 397 529 352 Antisense
CCCAACACCTACTCAGCTTGGTTAC 164 245 411 Antisense
AATGTATGGTCTACACTCCGATCAG 186 165 437 Antisense
TCAGCTGGTGCACGACGGATCAAGA 292 625 458 Antisense
Sequence Source Affymetrix Proprietary Database