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[179861_at]

Description Y47D3B.1 /REP_DB=WormBase Gene ID /WP=CE19174 /TR=Q9XX03 /GB=CAA21039.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      6grp_highest_nonorm > 53      6grp_total > 71      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1117
1 2 3 4 range
A 186
(-2.4)
P
1157.9
(3)
P
897.6
(1.5)
P
86.7
(-3)
A
1071
B 212.6
(-1.9)
P
962.3
(3)
P
871.9
(2.4)
P
41.2
(-3)
A
921
C 202.6
(-2.2)
P
1021.6
(3)
P
859.9
(2)
P
83.2
(-3)
A
938
avr 200.4
(-2.2)
1047.3
(3)
876.5
(2)
70.4
(-3)
977

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1292
1 2 3 4 5 6 range
A 575.8
(-1.7)
P
659.9
(-1.3)
P
785.3
(-0.7)
P
1552
(3)
P
893.8
(-0.2)
P
317.2
(-3)
P
1235
B 556.7
(-1.1)
P
561.7
(-1.1)
P
862.6
(0.9)
P
1191.4
(3)
P
995.4
(1.7)
P
260
(-3)
P
931
C 627.7
(-1.1)
P
522.3
(-1.6)
P
1013.4
(1)
P
1392.7
(3)
P
1009.9
(1)
P
268.5
(-3)
P
1124
avr 586.7
(-1.3)
581.3
(-1.4)
887.1
(0.3)
1378.7
(3)
966.4
(0.7)
281.9
(-3)
1097
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 67.7
(-1.6)
P
251.3
(3)
P
234.6
(2.6)
P
12.7
(-3)
A
239
B 67.8
(-1.5)
P
237.7
(3)
P
202
(2.1)
P
8.8
(-3)
A
229
C 67.1
(-1.9)
P
293.7
(2.9)
P
299.7
(3)
P
14
(-3)
A
286
avr 67.5
(-1.7)
260.9
(3)
245.4
(2.6)
11.8
(-3)
249

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 106.1
(-2.5)
P
234.7
(-0)
P
171
(-1.2)
P
393.6
(3)
P
269.7
(0.7)
P
77.2
(-3)
P
316
B 193.7
(-1.1)
P
187
(-1.2)
P
209.5
(-0.8)
P
315.6
(1.3)
P
404.4
(3)
P
97
(-3)
P
307
C 232.7
(0.6)
P
159.4
(-1.2)
P
257.9
(1.3)
P
280.1
(1.8)
P
326.8
(3)
P
89.9
(-3)
P
237
avr 177.5
(-0.8)
193.7
(-0.4)
212.8
(0)
329.8
(2.9)
333.6
(3)
88
(-3)
246
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7002
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.1 NCBI
Target Description Y47D3B.1 /REP_DB=WormBase Gene ID /WP=CE19174 /TR=Q9XX03 /GB=CAA21039.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067064(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_067064 NCBI Caenorhabditis elegans Y47D3B.1 (Y47D3B.1) mRNA, complete cds. 11/11 None
SNAP00000004510 ENSEMBL cdna:SNAP chromosome:CEL140:III:11378479:11388447:1 11/11 None
GENEFINDER00000004525 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11382106:11388447:1 11/11 None
Y47D3B.1 ENSEMBL cdna:known chromosome:CEL140:III:11382899:11388447:1 gene:Y47D3B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11382894-11388443(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3B.1
Entrez Gene 189978 Entrez gene
SwissProt Q9XX03 EMBL-EBI
WormBase CE31837 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21039 Hypothetical protein Y47D3B.1 [Caenorhabditis elegans] ref|NP_499465.2| Y47D3B.1 [Caenorhabditis elegans] 0.0
blast CAE67718 Hypothetical protein CBG13293 [Caenorhabditis briggsae] 0.0
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 8.0E-12
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 2.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.8E-14
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.3E-12
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004525 1 77-96
Sequence
Target Sequence
>C. ELEGANS:179861_AT
gagcatcgcgatgtccaatttgtccctccaaatcgtcaaggcgatcagagtctaacaaac
tttaatttcgaattcttgagaagctcaaagaataaaatgaactgcaatgtttggagaatg
aagactcgagttgtcgttaatgcaagccgcgtcgacagtgtaaacatgcacgagacagga
atccataggttcggctacgttcagacaagagttccatgccgacaagcccacttttaccat
cttcgtcattcccataatactgttccatctccaacacccatcaatatgtccccgttggct
gatatgcttaataaacaatggcaaactcgcgtggaaggattcactggaatgaaagatgaa
gtgttgaataagacgaacacagagtatttggaagattttgataggtgcatgggagctatt
aatgacgagcattggactatgaaggtatctcgatgcctaacccctcatgtgtgcttcagt
aggttacgccgagaagtcgattgtgttgcggtagcgtctgaatacgagttttatcgatct
ggaaaggtccgcatccagaaagcagaggtaaactgtgaatcacctgtgccgcc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GAGCATCGCGATGTCCAATTTGTCC 685 387 826 Antisense
GTCCCTCCAAATCGTCAAGGCGATC 177 475 847 Antisense
AATGCAAGCCGCGTCGACAGTGTAA 263 165 964 Antisense
GAATCCATAGGTTCGGCTACGTTCA 86 331 1004 Antisense
GTTCAGACAAGAGTTCCATGCCGAC 312 445 1024 Antisense
ATTCCCATAATACTGTTCCATCTCC 448 9 1073 Antisense
TGTCCCCGTTGGCTGATATGCTTAA 76 557 1112 Antisense
TGAAGGTATCTCGATGCCTAACCCC 429 573 1265 Antisense
ACCCCTCATGTGTGCTTCAGTAGGT 622 89 1285 Antisense
AAGTCGATTGTGTTGCGGTAGCGTC 457 155 1319 Antisense
TAAACTGTGAATCACCTGTGCCGCC 93 641 1394 Antisense
Sequence Source Affymetrix Proprietary Database