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[179860_at]

Description K04C2.5 /REP_DB=WormBase Gene ID /WP=CE00799 /TR=Q21211 /GB=AAA50680.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 83      4grp_total > 49      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 9.3
(-2.7)
A 		131.1
(2.8)
P 		135.9
(3)
P 		3.5
(-3)
A 		132
B 3.8
(-3)
A 		121.8
(2.1)
P 		142.4
(3)
P 		29.8
(-1.9)
P 		139
C 20.2
(-3)
A 		178.8
(2.2)
P 		203.2
(3)
P 		45
(-2.2)
A 		183
avr 11.1
(-3) 		143.9
(2.3) 		160.5
(3) 		26.1
(-2.4) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 59.5
(-3)
P 		92.5
(-2.3)
P 		146.5
(-1.3)
P 		249.5
(0.8)
P 		358
(3)
P 		142.7
(-1.3)
P 		299
B 21.4
(-3)
M 		128.4
(-1.3)
P 		53.5
(-2.5)
P 		309.1
(1.6)
P 		394.7
(3)
P 		125.9
(-1.3)
P 		373
C 32
(-3)
P 		111.2
(-1.9)
P 		80
(-2.3)
P 		274.5
(0.4)
P 		460.7
(3)
P 		119.8
(-1.8)
P 		429
avr 37.6
(-3) 		110.7
(-1.8) 		93.3
(-2.1) 		277.7
(0.9) 		404.5
(3) 		129.5
(-1.5) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 3.4
(-2.5)
A 		28.5
(1.8)
P 		35.5
(3)
P 		0.5
(-3)
A 		35
B 1.2
(-3)
A 		30.1
(2.5)
P 		33
(3)
P 		6.4
(-2)
P 		32
C 6.7
(-3)
A 		51.4
(1.2)
P 		70.8
(3)
P 		7.6
(-2.9)
A 		64
avr 3.8
(-3) 		36.7
(1.6) 		46.4
(3) 		4.8
(-2.9) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 11
(-3)
P 		32.9
(-1.6)
P 		31.9
(-1.7)
P 		63.3
(0.2)
P 		108
(3)
P 		34.7
(-1.5)
P 		97
B 7.4
(-3)
M 		42.7
(-1.6)
P 		13
(-2.8)
P 		81.9
(-0.1)
P 		160.4
(3)
P 		47
(-1.4)
P 		153
C 11.8
(-3)
P 		33.9
(-2)
P 		20.4
(-2.6)
P 		55.2
(-1.1)
P 		149.1
(3)
P 		40.1
(-1.8)
P 		137
avr 10.1
(-3) 		36.5
(-1.8) 		21.8
(-2.5) 		66.8
(-0.4) 		139.2
(3) 		40.6
(-1.6) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6273
Sequence Type Exemplar sequence
Representative Public ID K04C2.5 NCBI
Target Description K04C2.5 /REP_DB=WormBase Gene ID /WP=CE00799 /TR=Q21211 /GB=AAA50680.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066099 NCBI Caenorhabditis elegans K04C2.5 (K04C2.5) mRNA, complete cds. 11/11 None
SNAP00000012111 ENSEMBL cdna:SNAP chromosome:CEL140:III:6890976:6891536:-1 11/11 None
GENEFINDER00000012119 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6890976:6891536:-1 11/11 None
K04C2.5 ENSEMBL cdna:known chromosome:CEL140:III:6890976:6891536:-1 gene:K04C2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6890974-6891535(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04C2.5
Entrez Gene 186982 Entrez gene
SwissProt Q21211 EMBL-EBI
WormBase CE00799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50680 Hypothetical protein K04C2.5 [Caenorhabditis elegans] ref|NP_498500.1| K04C2.5 [Caenorhabditis elegans] 9.0E-51
Sequence
Target Sequence 
>C. ELEGANS:179860_AT
tcggaatttttctgatcgcggcaatcaatggacaagcgtctaaaaggcggattcagtacg
aatcggtttcacagtttttgtttcataactctaaattatgcggtgatccattttctgatg
ctgtctggcttcctgtactcgatttatgttctatcgagtgtgaaataacatccgaatatt
gtgtggaaaatgaggaacttacacaacaatgcaagaaattaccggaagattgccaggctc
ttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGAATTTTTCTGATCGCGGCAAT 530 605 35 Antisense
TTCTGATCGCGGCAATCAATGGACA 209 693 44 Antisense
GGACAAGCGTCTAAAAGGCGGATTC 543 523 64 Antisense
GGCGGATTCAGTACGAATCGGTTTC 446 539 80 Antisense
TCACAGTTTTTGTTTCATAACTCTA 463 627 103 Antisense
TAACTCTAAATTATGCGGTGATCCA 626 627 120 Antisense
TGCGGTGATCCATTTTCTGATGCTG 443 583 133 Antisense
CCATTTTCTGATGCTGTCTGGCTTC 146 271 142 Antisense
GGCTTCCTGTACTCGATTTATGTTC 356 535 161 Antisense
ATGAGGAACTTACACAACAATGCAA 369 41 224 Antisense
CCGGAAGATTGCCAGGCTCTTCTCC 303 265 256 Antisense
Sequence Source Affymetrix Proprietary Database