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[179859_at]

Description T20H9.3 /REP_DB=WormBase Gene ID /WP=CE13860 /TR=O44889 /GB=AAB95052.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 16.6
(-2.2)
A 		26.7
(-1.3)
A 		6.9
(-3)
A 		77.9
(3)
A 		71
B 18.8
(-0.2)
A 		19.8
(-0.1)
A 		2.5
(-3)
A 		37.8
(3)
A 		35
C 2.8
(-3)
A 		25.2
(-1.2)
A 		17
(-1.9)
A 		77.7
(3)
M 		75
avr 12.7
(-2.6) 		23.9
(-1.4) 		8.8
(-3) 		64.5
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 8.7
(-2.5)
A 		31
(0.1)
A 		38.1
(0.9)
A 		56
(3)
A 		35.6
(0.6)
A 		4.5
(-3)
A 		52
B 12.5
(-3)
A 		14.4
(-2.6)
A 		27.1
(0.4)
A 		38.1
(3)
A 		25.8
(0.1)
A 		24.6
(-0.2)
A 		26
C 2.6
(-3)
A 		23.8
(-0.1)
A 		3.6
(-2.9)
A 		5.6
(-2.6)
A 		46.1
(3)
A 		4.1
(-2.8)
A 		44
avr 7.9
(-3) 		23.1
(0.3) 		22.9
(0.2) 		33.2
(2.4) 		35.8
(3) 		11.1
(-2.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6
(-0.4)
A 		5.8
(-0.5)
A 		1.8
(-3)
A 		11.4
(3)
A 		10
B 6
(1.3)
A 		4.9
(0.4)
A 		0.6
(-3)
A 		8.1
(3)
A 		8
C 0.9
(-3)
A 		7.2
(0.1)
A 		5.9
(-0.5)
A 		13.1
(3)
M 		12
avr 4.3
(-1.9) 		6
(-0.6) 		2.8
(-3) 		10.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		11
(1.5)
A 		8.3
(0.3)
A 		14.2
(3)
A 		10.7
(1.4)
A 		1.1
(-3)
A 		13
B 4.3
(-3)
A 		4.8
(-2.5)
A 		6.6
(-0.8)
A 		10.1
(2.6)
A 		10.5
(3)
A 		9.2
(1.7)
A 		6
C 1
(-3)
A 		7.3
(-0.3)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		14.9
(3)
A 		1.4
(-2.8)
A 		14
avr 2.3
(-3) 		7.7
(0.3) 		5.3
(-1.1) 		8.5
(0.8) 		12
(3) 		3.9
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8223
Sequence Type Exemplar sequence
Representative Public ID T20H9.3 NCBI
Target Description T20H9.3 /REP_DB=WormBase Gene ID /WP=CE13860 /TR=O44889 /GB=AAB95052.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065125 NCBI Caenorhabditis elegans T20H9.3 (T20H9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000029859 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2253912:2256936:1 9/11 None
T20H9.3 ENSEMBL cdna:known chromosome:CEL140:III:2255991:2257366:1 gene:T20H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2255990-2257366(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20H9.3
Entrez Gene 188666 Entrez gene
SwissProt O44889 EMBL-EBI
WormBase CE13860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95052 Hypothetical protein T20H9.3 [Caenorhabditis elegans] ref|NP_497526.1| T20H9.3 [Caenorhabditis elegans] 0.0
blast AAB95052 Hypothetical protein T20H9.3 [Caenorhabditis elegans] ref|NP_497526.1| T20H9.3 [Caenorhabditis elegans] 1.0E-157
blast AAB95053 Hypothetical protein T20H9.4 [Caenorhabditis elegans] ref|NP_497525.1| T20H9.4 [Caenorhabditis elegans] 1.0E-131
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 4.0E-48
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 3.0E-47
blast AAC68927 Hypothetical protein T12B5.1 [Caenorhabditis elegans] ref|NP_497307.1| T12B5.1 [Caenorhabditis elegans] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.9E-58
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-49
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.9E-58
Sequence
Target Sequence 
>C. ELEGANS:179859_AT
atcggaaaatggtcttcccgcgaagaaagtaacacttctaagattcgcattcaatgatct
ttttgatatactcccatgtttcgatgcactggaagacatagagttgtggtacataagctc
catcgaccaatttcaacggatagcttctcttgagcagtggaagaaaacaaaaagattttg
tatcgaagaccatttgtttgacaatgaacaaattgaactcttcttccactttgaagtctt
tggcatagattttgataaattctcggtgcagaatgcagttaaagtcagagatgatctttt
gagaagaagcacatttcaaagttgtgggataaatttcaaagaatcaggccctgtcgaaat
agcaaaactattcaaactggactatgttggtggtgaaacattcgaaatggaatattcaaa
caaaaatggaaaattcgaggtttcgattgacgagaatttgttttctgtggaaagattaaa
atttttccgaattccattgatttcttttggtttttcgaatcatctagaattttcaagcac
gatttcatttattagcttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGAAAATGGTCTTCCCGCGAAG 98 35 354 Antisense
GTAACACTTCTAAGATTCGCATTCA 522 461 382 Antisense
GATCTTTTTGATATACTCCCATGTT 106 421 409 Antisense
TACTCCCATGTTTCGATGCACTGGA 432 645 422 Antisense
GTTGTGGTACATAAGCTCCATCGAC 496 437 456 Antisense
GCTCCATCGACCAATTTCAACGGAT 625 297 470 Antisense
AACGGATAGCTTCTCTTGAGCAGTG 124 143 488 Antisense
CTCTTCTTCCACTTTGAAGTCTTTG 147 231 571 Antisense
GAATCAGGCCCTGTCGAAATAGCAA 207 327 694 Antisense
TTTCCGAATTCCATTGATTTCTTTT 63 669 837 Antisense
GCACGATTTCATTTATTAGCTTGGC 385 315 890 Antisense
Sequence Source Affymetrix Proprietary Database