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[179858_at]

Description C49C8.5 /REP_DB=WormBase Gene ID /WP=CE08840 /TR=Q18705 /GB=AAB03126.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_high_8_8 > 49      6grp_highest_nonorm > 41      6grp_total > 31      4grp_total > 62      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 677
1 2 3 4 range
A 657.3
(3)
P 		459.7
(0.9)
P 		458.1
(0.9)
P 		83.9
(-3)
M 		573
B 760.9
(3)
P 		373.5
(-0.6)
P 		499
(0.6)
P 		114.1
(-3)
P 		647
C 745.7
(3)
P 		418.6
(-0.2)
P 		602.8
(1.6)
P 		139.5
(-3)
M 		606
avr 721.3
(3) 		417.3
(0) 		520
(1) 		112.5
(-3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 730
1 2 3 4 5 6 range
A 601.7
(-0.6)
P 		835.8
(1.6)
P 		990.5
(3)
P 		612.7
(-0.5)
P 		436.6
(-2.1)
P 		339.1
(-3)
P 		651
B 657.8
(-0.8)
P 		973.5
(2.1)
P 		1068.6
(3)
P 		680.6
(-0.6)
P 		495.6
(-2.4)
P 		428.2
(-3)
P 		640
C 920.7
(3)
P 		877.8
(2.4)
P 		856.9
(2.2)
P 		582.2
(-1.4)
P 		553.9
(-1.8)
P 		458.6
(-3)
P 		462
avr 726.7
(0.4) 		895.7
(2.2) 		972
(3) 		625.2
(-0.7) 		495.4
(-2.1) 		408.6
(-3) 		563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 239.3
(3)
P 		99.8
(-0.7)
P 		119.8
(-0.2)
P 		12.3
(-3)
M 		227
B 242.6
(3)
P 		92.2
(-1.1)
P 		115.6
(-0.5)
P 		24.3
(-3)
P 		218
C 246.8
(3)
P 		120.3
(-0.4)
P 		210.1
(2)
P 		23.5
(-3)
M 		223
avr 242.9
(3) 		104.1
(-0.7) 		148.5
(0.5) 		20
(-3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 110.9
(-2.2)
P 		297.3
(3)
P 		215.7
(0.7)
P 		155.4
(-1)
P 		131.8
(-1.6)
P 		82.6
(-3)
P 		215
B 228.9
(-0.5)
P 		324
(3)
P 		259.5
(0.6)
P 		180.3
(-2.2)
P 		201.4
(-1.5)
P 		159.7
(-3)
P 		164
C 341.3
(3)
P 		267.8
(1)
P 		218.1
(-0.3)
P 		117.1
(-3)
P 		179.2
(-1.3)
P 		153.5
(-2)
P 		224
avr 227
(0.5) 		296.4
(3) 		231.1
(0.6) 		150.9
(-2.3) 		170.8
(-1.6) 		131.9
(-3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9869
Sequence Type Exemplar sequence
Representative Public ID C49C8.5 NCBI
Target Description C49C8.5 /REP_DB=WormBase Gene ID /WP=CE08840 /TR=Q18705 /GB=AAB03126.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069080 NCBI Caenorhabditis elegans C49C8.5 (C49C8.5) mRNA, complete cds. 11/11 A 
SNAP00000039872 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8648672:8653640:-1 11/11 None
GENEFINDER00000039882 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8648672:8650485:-1 11/11 None
C49C8.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:8648658:8653659:-1 gene:C49C8.5 11/11 None
C49C8.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:8648658:8653646:-1 gene:C49C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8648677-8653646(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C8.5
Entrez Gene 177668 Entrez gene
SwissProt Q18705 EMBL-EBI
WormBase CE31453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03126 Hypothetical protein C49C8.5 [Caenorhabditis elegans] ref|NP_501481.2| C49C8.5 [Caenorhabditis elegans] 0.0
blast AAB03126 Hypothetical protein C49C8.5 [Caenorhabditis elegans] ref|NP_501481.2| C49C8.5 [Caenorhabditis elegans] 1.0E-171
blast CAE60731 Hypothetical protein CBG04412 [Caenorhabditis briggsae] 1.0E-114
blast CAA19505 Hypothetical protein Y43C5A.2 [Caenorhabditis elegans] ref|NP_501883.1| Y43C5A.2 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 8.6E-12
Sequence
Target Sequence 
>C. ELEGANS:179858_AT
gaagagagggatccaacatcacatttgacattccctttgcaaattattctgattggtttg
gtgaatctggagtcgggaagaacttttggttgggattggataatatgaataatttgagta
caaacgggaaaacgtattcactacaaattgatttatgctgtggaactcaattgatggcta
aacagctttatactaacttcaaggttgctacaaaggccgaacaatatgcgttgacggcaa
gcgctgacttgcccggaataggtcttgattactcgtcttcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGAGGGATCCAACATCACATT 59 339 716 Antisense
ACATCACATTTGACATTCCCTTTGC 315 105 731 Antisense
GACATTCCCTTTGCAAATTATTCTG 266 371 742 Antisense
GGTTTGGTGAATCTGGAGTCGGGAA 647 501 770 Antisense
TATGCTGTGGAACTCAATTGATGGC 643 655 869 Antisense
AACAGCTTTATACTAACTTCAAGGT 574 135 896 Antisense
ACTTCAAGGTTGCTACAAAGGCCGA 16 99 911 Antisense
CAAAGGCCGAACAATATGCGTTGAC 92 193 926 Antisense
ATGCGTTGACGGCAAGCGCTGACTT 403 37 941 Antisense
CGCTGACTTGCCCGGAATAGGTCTT 288 253 957 Antisense
TAGGTCTTGATTACTCGTCTTCAGC 37 655 974 Antisense
Sequence Source Affymetrix Proprietary Database