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[179856_at]

Description F22E5.1 /REP_DB=WormBase Gene ID /WP=CE09553 /TR=O16719 /GB=AAB66167.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 91      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 108
(-1.9)
M 		134.6
(-1)
P 		76.5
(-3)
P 		252.3
(3)
P 		176
B 78.1
(-3)
A 		94.6
(-0.9)
P 		124.8
(3)
P 		104.8
(0.4)
P 		47
C 111
(-3)
P 		155.9
(1.4)
P 		126.3
(-1.5)
P 		171.7
(3)
P 		61
avr 99
(-3) 		128.4
(-0.7) 		109.2
(-2.2) 		176.3
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 159.5
(3)
P 		77.4
(-3)
M 		93.1
(-1.9)
P 		77.7
(-3)
P 		124.2
(0.4)
P 		112.9
(-0.4)
P 		82
B 104.2
(-0.1)
P 		69.1
(-3)
A 		73.7
(-2.6)
A 		104.2
(-0.1)
P 		141.9
(3)
P 		88.8
(-1.4)
P 		73
C 69.1
(-2.5)
P 		120
(1.4)
A 		62.2
(-3)
A 		140.6
(3)
P 		99.2
(-0.2)
P 		65.3
(-2.8)
M 		78
avr 110.9
(1.6) 		88.8
(-1.4) 		76.3
(-3) 		107.5
(1.1) 		121.8
(3) 		89
(-1.3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 39.3
(3)
M 		29.2
(-0.1)
P 		20
(-3)
P 		36.9
(2.3)
P 		19
B 24.9
(-0.6)
A 		23.4
(-2)
P 		28.9
(3)
P 		22.3
(-3)
P 		7
C 36.7
(-0.1)
P 		44.8
(3)
P 		44
(2.7)
P 		29
(-3)
P 		16
avr 33.6
(3) 		32.5
(1.4) 		31
(-0.7) 		29.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 29.4
(0.3)
P 		27.5
(-0.4)
M 		20.3
(-2.8)
P 		19.7
(-3)
P 		37.5
(3)
P 		27.5
(-0.4)
P 		18
B 36.3
(-0.2)
P 		23
(-2.2)
A 		17.9
(-3)
A 		27.6
(-1.5)
P 		57.7
(3)
P 		33.1
(-0.7)
P 		40
C 25.6
(-0.2)
P 		36.6
(3)
A 		15.8
(-3)
A 		28.3
(0.6)
P 		32.1
(1.7)
P 		21.9
(-1.2)
M 		21
avr 30.4
(0) 		29
(-0.3) 		18
(-3) 		25.2
(-1.2) 		42.4
(3) 		27.5
(-0.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5192
Sequence Type Exemplar sequence
Representative Public ID F22E5.1 NCBI
Target Description F22E5.1 /REP_DB=WormBase Gene ID /WP=CE09553 /TR=O16719 /GB=AAB66167.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061928 NCBI Caenorhabditis elegans F22E5.1 (F22E5.1) mRNA, complete cds. 11/11 A 
SNAP00000023619 ENSEMBL cdna:SNAP chromosome:CEL140:II:2675789:2677538:1 11/11 None
F22E5.1 ENSEMBL cdna:known chromosome:CEL140:II:2675789:2677538:1 gene:F22E5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006768 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023630 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2675787-2677537(+) 100.0 100.0
chrII:3181543-3182682(-) 80.41 80.41
Public Domain and Genome References
Gene Title
Ensembl F22E5.1
Entrez Gene 184831 Entrez gene
SwissProt O16719 EMBL-EBI
WormBase CE09553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494329 F22E5.1 [Caenorhabditis elegans] gb|AAB66167.1| Hypothetical protein F22E5.1 [Caenorhabditis elegans] 0.0
blast NP_494466 Y27F2A.6 [Caenorhabditis elegans] gb|AAF60473.1| Hypothetical protein Y27F2A.6 [Caenorhabditis elegans] 1.0E-147
blast AAB18283 Hypothetical protein C16D9.5 [Caenorhabditis elegans] ref|NP_505125.2| C16D9.5 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494329.1 1 7-26
F22E5.1 1 7-26
SNAP00000023619 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:179856_AT
taagccactgctcctagcggagctcctgaaagagcatccgaatatttggtggatggatgc
acatttgtcagtgaagaagcctaatatggtggagctgatgatgaaggaggttgcagaaaa
aactaagaaatctgagacaaaagtgacagtctccatatacttcttcatttattccagcca
cagcaactttgccacattaaacacagctctgctggactacttcccaacaaattcgatagg
ccttctgaaggacccgaacctcggatcccagatgggtgcgaatacaatttatatggcaag
aactcagtatacaatggagacgtttaagtggtgggtcctgtgcgcccttgactacacttg
catgaaaccacccggagcccaggtctcctgcagattccccaataatgatcggaatacaca
gtttgctcactgcttcaggttcgaccaatccgtgctgaaccttttgatgctcaatgactt
ccaggatcatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCCACTGCTCCTAGCGGAGCTC 8 639 600 Antisense
GCGGAGCTCCTGAAAGAGCATCCGA 613 293 616 Antisense
ATCCCAGATGGGTGCGAATACAATT 121 37 864 Antisense
TTTAAGTGGTGGGTCCTGTGCGCCC 215 673 922 Antisense
GCCCTTGACTACACTTGCATGAAAC 335 287 943 Antisense
TCCTGCAGATTCCCCAATAATGATC 188 593 985 Antisense
GATCGGAATACACAGTTTGCTCACT 37 419 1006 Antisense
CACAGTTTGCTCACTGCTTCAGGTT 434 195 1016 Antisense
TTCAGGTTCGACCAATCCGTGCTGA 403 683 1033 Antisense
TCCGTGCTGAACCTTTTGATGCTCA 451 595 1048 Antisense
GCTCAATGACTTCCAGGATCATCAC 592 301 1068 Antisense
Sequence Source Affymetrix Proprietary Database