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[179855_at]

Description C37A2.6 /REP_DB=WormBase Gene ID /WP=CE08615 /TR=O01503 /GB=AAB52451.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      6grp_total > 54      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 62
(0.1)
P 		87
(3)
A 		76.3
(1.8)
A 		34.6
(-3)
A 		52
B 68.3
(-1.3)
P 		77.7
(1.3)
P 		62
(-3)
A 		83.9
(3)
P 		22
C 72.2
(-2.2)
P 		109.3
(3)
A 		66.5
(-3)
M 		96.8
(1.2)
P 		43
avr 67.5
(-3) 		91.3
(3) 		68.3
(-2.8) 		71.8
(-1.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 81.8
(-3)
P 		83
(-2.7)
P 		105.5
(3)
P 		91.8
(-0.5)
P 		95
(0.3)
P 		81.9
(-3)
P 		24
B 85.8
(0.2)
P 		108.9
(3)
P 		104.1
(2.4)
P 		58.7
(-3)
P 		107
(2.8)
P 		89.7
(0.7)
P 		50
C 79.7
(-2.8)
P 		94.2
(-0.6)
P 		93.6
(-0.7)
P 		78.6
(-3)
P 		88.5
(-1.5)
A 		117.6
(3)
P 		39
avr 82.4
(-1.5) 		95.4
(1.6) 		101.1
(3) 		76.4
(-3) 		96.8
(2) 		96.4
(1.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 22.6
(3)
P 		18.9
(1.7)
A 		19.9
(2.1)
A 		5.1
(-3)
A 		18
B 21.8
(3)
P 		19.2
(0.9)
P 		14.4
(-3)
A 		17.9
(-0.2)
P 		7
C 23.9
(0)
P 		31.4
(3)
A 		23.2
(-0.3)
M 		16.3
(-3)
P 		15
avr 22.8
(2.8) 		23.2
(3) 		19.2
(0.6) 		13.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 15.1
(-3)
P 		29.5
(3)
P 		23
(0.3)
P 		23.3
(0.4)
P 		28.7
(2.7)
P 		19.9
(-1)
P 		14
B 29.9
(0.1)
P 		36.2
(1.4)
P 		25.3
(-0.9)
P 		15.5
(-3)
P 		43.5
(3)
P 		33.4
(0.8)
P 		28
C 29.5
(0.5)
P 		28.7
(0.3)
P 		23.8
(-1)
P 		15.8
(-3)
P 		28.6
(0.3)
A 		39.4
(3)
P 		24
avr 24.8
(-0.4) 		31.5
(2.2) 		24
(-0.7) 		18.2
(-3) 		33.6
(3) 		30.9
(1.9) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1207
Sequence Type Exemplar sequence
Representative Public ID C37A2.6 NCBI
Target Description C37A2.6 /REP_DB=WormBase Gene ID /WP=CE08615 /TR=O01503 /GB=AAB52451.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059542 NCBI Caenorhabditis elegans C37A2.6 (C37A2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000014189 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6796217:6797870:-1 11/11 None
C37A2.6 ENSEMBL cdna:known chromosome:CEL140:I:6796043:6797120:-1 gene:C37A2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014178 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6795971-6797049(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37A2.6
Entrez Gene 183284 Entrez gene
SwissProt O01503 EMBL-EBI
WormBase CE08615 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.16679.1.S1_AT similar to C37A2.6 cfa
CHICKEN:GGA.11868.1.S1_A_AT similar to hypothetical protein MGC50559 gga
U133_X3P:HS2.435199.4.S1_3P_A_AT hypothetical protein MGC50559 hs
U133_X3P:HS2.435199.3.S1_3P_S_AT hypothetical protein MGC50559 hs
U133_X3P:HS2.435199.1.S2_3P_A_AT hypothetical protein MGC50559 hs
U133_X3P:HS2.435199.1.S1_3P_A_AT hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1554582_A_AT hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1554583_A_AT hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1563474_AT hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1563475_S_AT hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1569792_A_AT hypothetical protein MGC50559 hs
HG-U95D:80395_AT hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1570579_AT Hypothetical protein MGC50559 hs
U133_X3P:HS2.407504.1.S1_3P_AT Hypothetical protein MGC50559 hs
HG-U133_PLUS_2:1570578_AT Hypothetical protein MGC50559 hs
HG-U133_PLUS_2:231332_AT Hypothetical protein MGC50559 hs
HG-U133B:231332_AT Hypothetical protein MGC50559 hs
U133_X3P:HS.254986.0.A1_3P_AT Hypothetical protein MGC50559 hs
MOUSE430_2:1427202_AT RIKEN cDNA 4833442J19 gene mm
MOE430A:1427202_AT RIKEN cDNA 4833442J19 gene mm
MOUSE430A_2:1427202_AT RIKEN cDNA 4833442J19 gene mm
MU11KSUBA:AA163476_S_AT RIKEN cDNA 4833442J19 gene mm
MG-U74AV2:102233_AT RIKEN cDNA 4833442J19 gene mm
MOE430B:1457915_AT RIKEN cDNA 4833442J19 gene mm
MOUSE430_2:1457915_AT RIKEN cDNA 4833442J19 gene mm
RG-U34C:RC_AI233099_AT Unknown (protein for MGC:72974) rn
RAE230A:1376200_AT Unknown (protein for MGC:72974) rn
RAT230_2:1376200_AT Unknown (protein for MGC:72974) rn
RAE230B:1380668_AT Unknown (protein for MGC:72974) rn
RAT230_2:1380668_AT Unknown (protein for MGC:72974) rn
Protein Similarities
Method ID Description E-Value
blast AAB52451 Hypothetical protein C37A2.6 [Caenorhabditis elegans] ref|NP_491943.1| C37A2.6 [Caenorhabditis elegans] 1.0E-141
blast AAB52451 Hypothetical protein C37A2.6 [Caenorhabditis elegans] ref|NP_491943.1| C37A2.6 [Caenorhabditis elegans] 1.0E-125
blast CAE67314 Hypothetical protein CBG12771 [Caenorhabditis briggsae] 1.0E-99
blast CAE67314 Hypothetical protein CBG12771 [Caenorhabditis briggsae] 1.0E-96
blast XP_608933 PREDICTED: similar to C37A2.6 [Bos taurus] 4.0E-31
blast XP_608933 PREDICTED: similar to C37A2.6 [Bos taurus] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001813 EMBL-EBI Ribosomal protein 60S 6.5E-14
Sequence
Target Sequence 
>C. ELEGANS:179855_AT
attgggcattctattggcctggcggccaaggcctatcaaggttcattcttgataataaac
ctttgtttcaaggatcagaaattgtcgacttcggcgccggctgtggttcagcctcgatat
ctgcttctatttgtggagcgaagaagattctagcaaacgacattgatagatatgcacttc
tatccacgaagctcaatttccatctgaacaatttaagagattcaaagattcaatactctt
cgatcaattttttagatgataaaaatgaaagaatgtccactcaatttttcactgactcca
aaaatatcagaaaattcattctcctaggtgacatgttttacgattctgactttgctgaac
ttcttttttcgtggcttaaaaaaattcaagatgcacatatggtcagagtacttgttggtg
accccgatcgtcatccactagccgaatccgaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGGCATTCTATTGGCCTGGCGG 456 3 170 Antisense
GCGGCCAAGGCCTATCAAGGTTCAT 279 293 191 Antisense
TCAGAAATTGTCGACTTCGGCGCCG 299 623 244 Antisense
TTCAGCCTCGATATCTGCTTCTATT 687 687 276 Antisense
TATGCACTTCTATCCACGAAGCTCA 262 657 340 Antisense
CACGAAGCTCAATTTCCATCTGAAC 517 199 354 Antisense
AAGAATGTCCACTCAATTTTTCACT 602 151 438 Antisense
GGTGACATGTTTTACGATTCTGACT 387 501 496 Antisense
TGCTGAACTTCTTTTTTCGTGGCTT 593 579 522 Antisense
AGAGTACTTGTTGGTGACCCCGATC 411 67 574 Antisense
TCATCCACTAGCCGAATCCGAATAC 153 621 600 Antisense
Sequence Source Affymetrix Proprietary Database