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[179854_at]

Description Y47D3A.2 /REP_DB=WormBase Gene ID /WP=CE24332 /TR=Q9U2D3 /GB=CAB55092.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 81      6grp_total > 60      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 456.8
(0.9)
P 		399.6
(0.1)
P 		598.3
(3)
P 		192.5
(-3)
P 		406
B 487.3
(1.2)
P 		327.9
(-0.7)
P 		644
(3)
P 		134.3
(-3)
P 		510
C 461
(1.4)
P 		406.6
(0.6)
P 		566.6
(3)
P 		162.2
(-3)
P 		404
avr 468.4
(1.2) 		378
(-0.1) 		603
(3) 		163
(-3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 261.1
(-1.5)
P 		275.1
(-0.8)
P 		355
(3)
P 		328.9
(1.7)
P 		248.7
(-2.1)
P 		230.4
(-3)
P 		125
B 273.7
(0.2)
P 		269.3
(0.1)
P 		335.1
(3)
P 		319.5
(2.3)
P 		205.8
(-2.8)
P 		201.2
(-3)
P 		134
C 223
(-2.1)
P 		280.9
(0.1)
P 		268.8
(-0.4)
P 		354.7
(3)
P 		201.2
(-3)
P 		238.5
(-1.5)
P 		154
avr 252.6
(-1.2) 		275.1
(-0.1) 		319.6
(2.2) 		334.4
(3) 		218.6
(-3) 		223.4
(-2.8) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 166.3
(3)
P 		86.7
(-0.5)
P 		156.4
(2.6)
P 		28.2
(-3)
P 		138
B 155.4
(3)
P 		81
(-0.5)
P 		149.2
(2.7)
P 		28.6
(-3)
P 		127
C 152.6
(1.4)
P 		116.9
(0.2)
P 		197.5
(3)
P 		27.3
(-3)
P 		170
avr 158.1
(2.6) 		94.9
(-0.1) 		167.7
(3) 		28
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 48.1
(-3)
P 		97.8
(3)
P 		77.3
(0.5)
P 		83.4
(1.3)
P 		75
(0.2)
P 		56.1
(-2)
P 		50
B 95.2
(3)
P 		89.7
(1.4)
P 		81.4
(-1.1)
P 		84.6
(-0.1)
P 		83.6
(-0.4)
P 		75
(-3)
P 		20
C 82.7
(2.1)
P 		85.7
(3)
P 		68.4
(-2)
P 		71.3
(-1.2)
P 		65.1
(-3)
P 		79.8
(1.3)
P 		21
avr 75.3
(-1.6) 		91.1
(3) 		75.7
(-1.4) 		79.8
(-0.3) 		74.6
(-1.8) 		70.3
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7556
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.2 NCBI
Target Description Y47D3A.2 /REP_DB=WormBase Gene ID /WP=CE24332 /TR=Q9U2D3 /GB=CAB55092.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067034 NCBI Caenorhabditis elegans Y47D3A.2 (Y47D3A.2) mRNA, complete cds. 11/11 None
SNAP00000007203 ENSEMBL cdna:SNAP chromosome:CEL140:III:11136762:11140833:-1 11/11 None
Y47D3A.2 ENSEMBL cdna:known chromosome:CEL140:III:11136762:11138771:-1 gene:Y47D3A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007294 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11136757-11138767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.2
Entrez Gene 189975 Entrez gene
SwissProt Q9U2D3 EMBL-EBI
WormBase CE24332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55092 Hypothetical protein Y47D3A.2 [Caenorhabditis elegans] ref|NP_499435.1| Y47D3A.2 [Caenorhabditis elegans] 1.0E-172
blast CAB55091 Hypothetical protein Y47D3A.1 [Caenorhabditis elegans] ref|NP_499436.1| Y47D3A.1 [Caenorhabditis elegans] 1.0E-161
blast CAB55092 Hypothetical protein Y47D3A.2 [Caenorhabditis elegans] ref|NP_499435.1| Y47D3A.2 [Caenorhabditis elegans] 1.0E-159
blast CAD91711 Hypothetical protein Y48A6C.5b [Caenorhabditis elegans] ref|NP_001022891.1| defective PHArynx development family member (pha-1) [Caenorhabditis elegans] 4.0E-80
blast CAA21768 Hypothetical protein T09F5.11 [Caenorhabditis elegans] emb|CAB05812.2| Hypothetical protein T09F5.11 [Caenorhabditis elegans] ref|NP_506746.1| T09F5.11 [Caenorhabditis elegans] 2.0E-22
blast NP_500678 Y9C9A.12 [Caenorhabditis elegans] gb|AAF60924.1| Hypothetical protein Y9C9A.12 [Caenorhabditis elegans] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.6E-53
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.0E-126
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.6E-53
Sequence
Target Sequence 
>C. ELEGANS:179854_AT
gtgcatttcatctattctgggtggtttatcgatgcacgtatctagcttgtcacttcgtgg
cttgtcttccaaagaaatgatgttaataatatcgaaatgtgaatctggagtactggaaag
tattcacttgggaaactgtaatatgctttgttcattaaatgaaatttgccaactggaaca
atggaaaatgacaaagtcactcaatgctcatggagggaaattttctgtggattctataca
acacttgtttcatttcacagagtttactatcactctagatacattatccacagaagacgc
catcaatgttagagatgtgctcgtcaaatcgtccaattttttgcactgttacatccatct
cccattcttaaacattcaagaaatcgctacaattttcaaacctgacttttccaatcactc
tgctgaaacattcacaatgacacttaaggaaacagttaatgaatttattattgacatgag
tccctaccacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATTTCATCTATTCTGGGTGGT 92 481 399 Antisense
GATGCACGTATCTAGCTTGTCACTT 363 413 429 Antisense
ACTTCGTGGCTTGTCTTCCAAAGAA 271 99 450 Antisense
GACAAAGTCACTCAATGCTCATGGA 136 367 588 Antisense
CATTATCCACAGAAGACGCCATCAA 634 215 680 Antisense
GAGATGTGCTCGTCAAATCGTCCAA 150 397 710 Antisense
TTTTTGCACTGTTACATCCATCTCC 4 675 736 Antisense
CCATCTCCCATTCTTAAACATTCAA 546 271 753 Antisense
AATCGCTACAATTTTCAAACCTGAC 193 169 780 Antisense
CAAACCTGACTTTTCCAATCACTCT 186 193 795 Antisense
TATTGACATGAGTCCCTACCACTTC 347 665 867 Antisense
Sequence Source Affymetrix Proprietary Database