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[179853_at]

Description R13F6.4 /REP_DB=WormBase Gene ID /WP=CE25086 /TR=Q21980 /GB=AAC47044.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 15      4grp_total > 55      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 497.5
(3)
P 		196.8
(-3)
P 		310.3
(-0.7)
P 		217.2
(-2.6)
A 		301
B 543.4
(3)
P 		335.7
(-0.5)
P 		212.8
(-2.5)
P 		184.3
(-3)
P 		359
C 619.1
(3)
P 		316.5
(-1.9)
P 		277.3
(-2.6)
P 		251.4
(-3)
A 		368
avr 553.3
(3) 		283
(-1.8) 		266.8
(-2.1) 		217.6
(-3) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 598
1 2 3 4 5 6 range
A 416.7
(-0.2)
P 		686.8
(3)
P 		181.8
(-3)
P 		288.3
(-1.7)
P 		237.3
(-2.3)
P 		305.3
(-1.5)
P 		505
B 528
(1.1)
P 		698.5
(3)
P 		151.1
(-3)
P 		269.8
(-1.7)
P 		192.3
(-2.5)
P 		274.1
(-1.7)
P 		547
C 749.2
(3)
P 		567.1
(1)
P 		419.1
(-0.6)
P 		282.4
(-2)
P 		275.6
(-2.1)
P 		194.1
(-3)
P 		555
avr 564.6
(1.8) 		650.8
(3) 		250.7
(-2.8) 		280.2
(-2.3) 		235.1
(-3) 		257.8
(-2.7) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 181.1
(3)
P 		42.7
(-2.6)
P 		81.1
(-1)
P 		31.8
(-3)
A 		149
B 173.3
(3)
P 		82.9
(-1)
P 		49.3
(-2.6)
P 		39.3
(-3)
P 		134
C 204.9
(3)
P 		91
(-1.2)
P 		96.6
(-1)
P 		42.4
(-3)
A 		163
avr 186.4
(3) 		72.2
(-1.6) 		75.7
(-1.5) 		37.8
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 76.8
(-1.9)
P 		244.3
(3)
P 		39.6
(-3)
P 		73.1
(-2)
P 		71.6
(-2.1)
P 		74.3
(-2)
P 		205
B 183.7
(1.5)
P 		232.5
(3)
P 		36.7
(-3)
P 		71.5
(-1.9)
P 		78.1
(-1.7)
P 		102.2
(-1)
P 		196
C 277.7
(3)
P 		173
(0.2)
P 		106.7
(-1.6)
P 		56.8
(-3)
P 		89.2
(-2.1)
P 		65
(-2.8)
P 		221
avr 179.4
(1.6) 		216.6
(3) 		61
(-3) 		67.1
(-2.8) 		79.6
(-2.3) 		80.5
(-2.2) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6757
Sequence Type Exemplar sequence
Representative Public ID R13F6.4 NCBI
Target Description R13F6.4 /REP_DB=WormBase Gene ID /WP=CE25086 /TR=Q21980 /GB=AAC47044.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027552(11), NM_171175(11), NM_066086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027552 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-152) (tag-152) mRNA, complete cds. 11/11 None
NM_171175 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-152) (tag-152) mRNA, complete cds. 11/11 None
NM_066086 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-152) (tag-152) mRNA, complete cds. 11/11 None
GENEFINDER00000003269 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6838192:6846715:1 11/11 None
SNAP00000003257 ENSEMBL cdna:SNAP chromosome:CEL140:III:6838211:6846715:1 11/11 None
R13F6.4a ENSEMBL cdna:known chromosome:CEL140:III:6838239:6847217:1 gene:R13F6.4 11/11 A 
R13F6.4b ENSEMBL cdna:known chromosome:CEL140:III:6838239:6847188:1 gene:R13F6.4 11/11 A 
R13F6.4c ENSEMBL cdna:known chromosome:CEL140:III:6843880:6846547:1 gene:R13F6.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6838237-6846714(+) 100.0 100.0
Public Domain and Genome References
Ensembl R13F6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022723 Temporarily Assigned Gene name family member (tag-152) [Caenorhabditis elegans] 0.0
blast BAD91086.1 Ten-1L [Caenorhabditis elegans] 0.0
blast NP_741203 Temporarily Assigned Gene name family member (tag-152) [Caenorhabditis elegans] gb|AAC47044.3| Temporarily assigned gene name protein 152, isoform a [Caenorhabditis elegans] 0.0
blast NP_498487 Temporarily Assigned Gene name family member (tag-152) [Caenorhabditis elegans] gb|AAN65304.1| Temporarily assigned gene name protein 152, isoform c [Caenorhabditis elegans] 0.0
blast BAD91087.1 Ten-1S [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.2
Pfam IPR001258 EMBL-EBI NHL repeat 0.033
Pfam IPR001258 EMBL-EBI NHL repeat 2.8
Pfam IPR001258 EMBL-EBI NHL repeat 0.023
Pfam IPR001258 EMBL-EBI NHL repeat 9.8E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.2
Pfam IPR001258 EMBL-EBI NHL repeat 0.033
Pfam IPR001258 EMBL-EBI NHL repeat 2.8
Pfam IPR001258 EMBL-EBI NHL repeat 0.023
Pfam IPR001258 EMBL-EBI NHL repeat 9.8E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.2
Pfam IPR001258 EMBL-EBI NHL repeat 0.033
Pfam IPR001258 EMBL-EBI NHL repeat 2.8
Pfam IPR001258 EMBL-EBI NHL repeat 0.023
Pfam IPR001258 EMBL-EBI NHL repeat 9.8E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.2
Pfam IPR001258 EMBL-EBI NHL repeat 0.033
Pfam IPR001258 EMBL-EBI NHL repeat 2.8
Pfam IPR001258 EMBL-EBI NHL repeat 0.023
Pfam IPR001258 EMBL-EBI NHL repeat 9.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022723.1 1 259-281
NP_741203.1 1 93-115
R13F6.4a 1 93-115
R13F6.4b 1 93-115
GENEFINDER00000003269 1 95-117
SNAP00000003257 1 94-116
Sequence
Target Sequence 
>C. ELEGANS:179853_AT
cttgactaccgtacttccaacacgattagcctcagacatatccctgacatctccaacttc
tgaaacttcatggtcaattgatgacgttggtttctcaaatttgttaattttgaacgaaga
tgctacaactggagaggttatggttgaaatgctatctgatttgaaatctgaagaacgcga
agtcatttcaaaactgtttgatggagtcaaatctcttgattttgccacgtggggtctggt
accaacgcgtcatttgtggagagctccgaactcgaagctagagctcagctcgacctcatt
ctcacattttacaatggccgtgaacaaggacagtgtggagttgagaaacggaaaatcgaa
gattgttgtccacttttcggaaaataaagctgaaattgttaagaaaattgtggaagagct
gaagacacgcgagaacattgccgtttggcgtgccgaacggaagagagctgaagctggaga
gaaaacgtggagacaatggagtgatcgtgagacacgcgaactaacttcgaaaggttctgt
ctctggatacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGACTACCGTACTTCCAACACGA 63 217 7086 Antisense
CTTCCAACACGATTAGCCTCAGACA 672 217 7099 Antisense
CTCAGACATATCCCTGACATCTCCA 466 229 7116 Antisense
TCTCTTGATTTTGCCACGTGGGGTC 448 607 7297 Antisense
GGTACCAACGCGTCATTTGTGGAGA 639 503 7323 Antisense
GTGGAGAGCTCCGAACTCGAAGCTA 698 489 7341 Antisense
GAAGCTAGAGCTCAGCTCGACCTCA 310 343 7359 Antisense
TCGACCTCATTCTCACATTTTACAA 188 603 7375 Antisense
AAGACACGCGAGAACATTGCCGTTT 26 153 7507 Antisense
ATTGCCGTTTGGCGTGCCGAACGGA 479 3 7522 Antisense
GAAAGGTTCTGTCTCTGGATACGAT 37 361 7614 Antisense
Sequence Source Affymetrix Proprietary Database