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[179851_at]

Description Y37D8A.2 /REP_DB=WormBase Gene ID /WP=CE20207 /TR=Q9XWV2 /GB=CAA21539.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 24      6grp_total > 42      4grp_total > 55      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2197
1 2 3 4 range
A 5211.1
(3)
P 		3213.5
(-2.8)
P 		4079.6
(-0.3)
P 		3137.9
(-3)
P 		2073
B 5335.1
(3)
P 		4244.3
(-2.5)
P 		4261
(-2.4)
P 		4151.3
(-3)
P 		1184
C 4895.5
(3)
P 		3643.2
(-1.8)
P 		3875.3
(-0.9)
P 		3320.6
(-3)
P 		1575
avr 5147.2
(3) 		3700.3
(-2.4) 		4072
(-1) 		3536.6
(-3) 		1611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2921
1 2 3 4 5 6 range
A 3604.9
(2)
P 		3582.5
(1.9)
P 		3988.1
(3)
P 		3357
(1.3)
P 		2830.1
(-0.2)
P 		1782.8
(-3)
P 		2205
B 4177
(2.3)
P 		3321.2
(0.5)
P 		4478.9
(3)
P 		3489.6
(0.9)
P 		2495.4
(-1.3)
P 		1717.1
(-3)
P 		2762
C 3293.2
(0.4)
P 		3088.4
(-0)
P 		4549.8
(3)
P 		3745.1
(1.3)
P 		2319.9
(-1.6)
P 		1628.7
(-3)
P 		2921
avr 3691.7
(1.5) 		3330.7
(0.7) 		4338.9
(3) 		3530.6
(1.2) 		2548.5
(-1.1) 		1709.5
(-3) 		2629
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1438
1 2 3 4 range
A 1897.3
(3)
P 		697.6
(-2)
P 		1066.5
(-0.5)
P 		459.3
(-3)
P 		1438
B 1701.3
(3)
P 		1048.2
(-1.8)
P 		987.4
(-2.2)
P 		884.6
(-3)
P 		817
C 1620.6
(3)
P 		1047.4
(-0.2)
P 		1350.7
(1.5)
P 		559.9
(-3)
P 		1061
avr 1739.7
(3) 		931.1
(-1.4) 		1134.9
(-0.3) 		634.6
(-3) 		1105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1019
1 2 3 4 5 6 range
A 664.5
(-1.4)
P 		1274.1
(3)
P 		868.5
(0.1)
P 		851.4
(-0)
P 		854
(-0)
P 		434.1
(-3)
P 		840
B 1453.4
(3)
P 		1105.5
(0.4)
P 		1087.6
(0.3)
P 		924.3
(-0.9)
P 		1013.9
(-0.2)
P 		640.3
(-3)
P 		813
C 1220.7
(3)
P 		942.4
(0.5)
P 		1158
(2.4)
P 		753.1
(-1.2)
P 		750.7
(-1.2)
P 		545.2
(-3)
P 		676
avr 1112.9
(3) 		1107.3
(2.9) 		1038
(2.2) 		842.9
(0.2) 		872.9
(0.5) 		539.9
(-3) 		573
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7487
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.2 NCBI
Target Description Y37D8A.2 /REP_DB=WormBase Gene ID /WP=CE20207 /TR=Q9XWV2 /GB=CAA21539.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067267 NCBI Caenorhabditis elegans Y37D8A.2 (Y37D8A.2) mRNA, complete cds. 11/11 None
SNAP00000028770 ENSEMBL cdna:SNAP chromosome:CEL140:III:12819948:12835208:1 11/11 None
GENEFINDER00000028804 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12820405:12825485:1 11/11 None
Y37D8A.2.1 ENSEMBL cdna:known chromosome:CEL140:III:12819677:12825518:1 gene:Y37D8A.2 11/11 None
Y37D8A.2.2 ENSEMBL cdna:known chromosome:CEL140:III:12820014:12825518:1 gene:Y37D8A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12820126-12825481(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.2
Entrez Gene 176698 Entrez gene
SwissProt Q9XWV2 EMBL-EBI
WormBase CE20207 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14325.1.S1_AT similar to F09B12.3 cfa
CHICKEN:GGAAFFX.22809.1.A1_AT similar to hypothetical protein LOC196463 gga
U133_X3P:HS.115896.0.A1_3P_X_AT hypothetical protein LOC196463 hs
U133_X3P:HS.115896.0.A1_3P_AT hypothetical protein LOC196463 hs
HG-U133_PLUS_2:228845_AT hypothetical protein LOC196463 hs
HG-U133B:228845_AT hypothetical protein LOC196463 hs
HG-U95E:88573_AT hypothetical protein LOC196463 hs
HG-U133_PLUS_2:243891_AT Hypothetical protein LOC196463 hs
HG-U133B:243891_AT Hypothetical protein LOC196463 hs
U133_X3P:HS.257392.0.A1_3P_AT Hypothetical protein LOC196463 hs
MG-U74BV2:107898_AT RIKEN cDNA 1300012G16 gene mm
MG-U74BV2:113546_AT RIKEN cDNA 1300012G16 gene mm
MOE430A:1423425_AT RIKEN cDNA 1300012G16 gene mm
MOUSE430A_2:1423425_AT RIKEN cDNA 1300012G16 gene mm
MOUSE430_2:1423425_AT RIKEN cDNA 1300012G16 gene mm
MOE430A:1423426_AT RIKEN cDNA 1300012G16 gene mm
MOUSE430A_2:1423426_AT RIKEN cDNA 1300012G16 gene mm
MOUSE430_2:1423426_AT RIKEN cDNA 1300012G16 gene mm
MU19KSUBA:TC23418_AT RIKEN cDNA 1300012G16 gene, mRNA (cDNA clone MGC:46805 IMAGE:4921245) mm
MU19KSUBB:TC31147_AT RIKEN cDNA 1300012G16 gene, mRNA (cDNA clone MGC:46805 IMAGE:4921245) mm
MU19KSUBB:TC34537_AT RIKEN cDNA 1300012G16 gene, mRNA (cDNA clone MGC:46805 IMAGE:4921245) mm
MU19KSUBB:TC34537_G_AT RIKEN cDNA 1300012G16 gene, mRNA (cDNA clone MGC:46805 IMAGE:4921245) mm
RG-U34C:RC_AI170850_AT RDCR-0918-3 protein rn
RAE230A:1375173_AT RDCR-0918-3 protein rn
RAT230_2:1375173_AT RDCR-0918-3 protein rn
RAE230A:1369922_AT RDCR-0918-3 protein rn
RAT230_2:1369922_AT RDCR-0918-3 protein rn
Protein Similarities
Method ID Description E-Value
blast CAA21539 Hypothetical protein Y37D8A.2 [Caenorhabditis elegans] ref|NP_499668.1| Y37D8A.2 [Caenorhabditis elegans] 0.0
blast CAE69535 Hypothetical protein CBG15744 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028804 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:179851_AT
gccacatagtccattccgacaaaacagcccacttattccgtgaaacctattggccaggct
acaatcaaccatactacaaacaaattattcgattctctgacactgacaaaatggtggaaa
agtttggtgactggtacagttatgataagacaccacgtgctcttatcttcaaacgagatc
acaatacagtcactgatatgagctcaatgattgcgcttatgagatcaaataactatacaa
aggatccactttccaagtgtgactgtaatccaccatattccgctgaaaacgcgattgcat
gccgttctgacttgaatcctctcaatggaacgtacccattcaagtcgcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACATAGTCCATTCCGACAAAAC 483 279 1106 Antisense
GACAAAACAGCCCACTTATTCCGTG 611 365 1123 Antisense
TTCCGTGAAACCTATTGGCCAGGCT 208 683 1141 Antisense
GGCCAGGCTACAATCAACCATACTA 223 543 1157 Antisense
ATTATTCGATTCTCTGACACTGACA 179 13 1189 Antisense
TAAGACACCACGTGCTCTTATCTTC 420 637 1251 Antisense
AAGGATCCACTTTCCAAGTGTGACT 14 161 1345 Antisense
GTGACTGTAATCCACCATATTCCGC 422 483 1364 Antisense
AAACGCGATTGCATGCCGTTCTGAC 281 127 1392 Antisense
CGTTCTGACTTGAATCCTCTCAATG 431 247 1408 Antisense
GAACGTACCCATTCAAGTCGCTTGG 666 345 1433 Antisense
Sequence Source Affymetrix Proprietary Database