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[179850_at]

Description T20H9.2 /REP_DB=WormBase Gene ID /WP=CE13858 /TR=O44888 /GB=AAB95051.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 46.7
(-1.7)
P 		31.8
(-3)
A 		67.2
(0)
P 		101.9
(3)
P 		70
B 53.2
(2.3)
P 		51.9
(1.8)
A 		39.2
(-3)
M 		55.2
(3)
P 		16
C 37.2
(-2.7)
A 		39.9
(-2.3)
A 		35.4
(-3)
P 		76.7
(3)
P 		41
avr 45.7
(-2.3) 		41.2
(-3) 		47.3
(-2) 		77.9
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 56.8
(0.6)
A 		39.6
(-1.4)
A 		38.5
(-1.5)
P 		70.4
(2.2)
P 		77.8
(3)
P 		25.2
(-3)
A 		53
B 27.5
(-2.9)
A 		71.2
(3)
P 		33.9
(-2.1)
P 		41.2
(-1.1)
P 		38.1
(-1.5)
P 		27
(-3)
P 		44
C 23.9
(-3)
A 		64.8
(3)
P 		52.1
(1.1)
P 		27.3
(-2.5)
A 		32.9
(-1.7)
P 		36.6
(-1.1)
M 		41
avr 36.1
(-1.7) 		58.5
(3) 		41.5
(-0.5) 		46.3
(0.5) 		49.6
(1.2) 		29.6
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 17
(2.7)
P 		6.9
(-3)
A 		17.6
(3)
P 		14.9
(1.5)
P 		11
B 17
(3)
P 		12.8
(-0.2)
A 		9.1
(-3)
M 		11.8
(-0.9)
P 		8
C 12.3
(0.4)
A 		11.5
(-3)
A 		12.3
(0.4)
P 		12.9
(3)
P 		1
avr 15.4
(3) 		10.4
(-3) 		13
(0.1) 		13.2
(0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.5
(-1.5)
A 		14.1
(-0.2)
A 		8.4
(-2.2)
P 		17.8
(1)
P 		23.5
(3)
P 		6.1
(-3)
A 		17
B 9.6
(-2.5)
A 		23.7
(3)
P 		8.2
(-3)
P 		10.9
(-2)
P 		15.5
(-0.2)
P 		10.1
(-2.3)
P 		16
C 8.9
(-1.6)
A 		19.8
(3)
P 		13.3
(0.3)
P 		5.5
(-3)
A 		10.7
(-0.8)
P 		12.2
(-0.2)
M 		14
avr 9.7
(-2.9) 		19.2
(3) 		10
(-2.7) 		11.4
(-1.8) 		16.6
(1.4) 		9.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8321
Sequence Type Exemplar sequence
Representative Public ID T20H9.2 NCBI
Target Description T20H9.2 /REP_DB=WormBase Gene ID /WP=CE13858 /TR=O44888 /GB=AAB95051.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065126 NCBI Caenorhabditis elegans T20H9.2 (T20H9.2) mRNA, complete cds. 11/11 None
T20H9.2 ENSEMBL cdna:known chromosome:CEL140:III:2257541:2258120:-1 gene:T20H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2257540-2258120(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20H9.2
Entrez Gene 188665 Entrez gene
SwissProt O44888 EMBL-EBI
WormBase CE13858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95051 Hypothetical protein T20H9.2 [Caenorhabditis elegans] ref|NP_497527.1| T20H9.2 [Caenorhabditis elegans] 1.0E-102
blast CAB04073 Hypothetical protein F09C6.6 [Caenorhabditis elegans] ref|NP_507270.1| F09C6.6 [Caenorhabditis elegans] 2.0E-22
blast AAF39772 Hypothetical protein C39B5.9 [Caenorhabditis elegans] ref|NP_497517.1| C39B5.9 [Caenorhabditis elegans] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.1E-23
Sequence
Target Sequence 
>C. ELEGANS:179850_AT
gaaaatccagacctttcatttgataagatcatccagctggatcaatggaagaatataaaa
gagttcaaacttcgaaggagggatggttggtttgacagtaatatgctcgcctatttggta
gaccttcaaagtttcacaattgagcaaacatggctcagctttccaattcaatgtgtagtt
caaattagagatgatgtcatgagaaggagtacatttcaaagttgcactgtacaatttggt
ttacattatacggagcggattgattttattgaaatagcaaaagtattcaaaccggaatat
gcaggtggcaatgaatttgaaattgtatattcaaacgatgacgacaagtttatgattaaa
tgtcagaagttcctatccaatgattggtgggatggtttctgtttttgtgtgaaaagattg
agttctgacgattttcttcacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCCAGACCTTTCATTTGATA 22 355 61 Antisense
GAAGGAGGGATGGTTGGTTTGACAG 56 335 134 Antisense
GGTTTGACAGTAATATGCTCGCCTA 610 505 149 Antisense
TATGCTCGCCTATTTGGTAGACCTT 255 655 162 Antisense
GGTAGACCTTCAAAGTTTCACAATT 290 503 177 Antisense
AGCAAACATGGCTCAGCTTTCCAAT 1 77 203 Antisense
GGCTCAGCTTTCCAATTCAATGTGT 37 539 212 Antisense
AGTTGCACTGTACAATTTGGTTTAC 305 63 280 Antisense
AAATGTCAGAAGTTCCTATCCAATG 494 119 418 Antisense
GGTGGGATGGTTTCTGTTTTTGTGT 380 497 446 Antisense
GAGTTCTGACGATTTTCTTCACATC 134 399 480 Antisense
Sequence Source Affymetrix Proprietary Database