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[179849_s_at]

Description F32D1.3 /REP_DB=WormBase Gene ID /WP=CE09867 /TR=O16296 /GB=AAB65353.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 05      6grp_total > 15      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 335.5
(3)
P 		179.7
(-1.4)
P 		123.7
(-3)
A 		163.7
(-1.9)
P 		212
B 290.5
(3)
P 		176.4
(-2.1)
A 		156.6
(-3)
A 		165.7
(-2.6)
P 		134
C 403.3
(3)
P 		182.4
(-2.5)
A 		161.9
(-3)
A 		189.8
(-2.3)
P 		241
avr 343.1
(3) 		179.5
(-2) 		147.4
(-3) 		173.1
(-2.2) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 319.9
(3)
P 		254.4
(1.4)
P 		193.5
(-0)
M 		94.9
(-2.4)
P 		91.1
(-2.5)
M 		69.7
(-3)
A 		250
B 299
(3)
P 		236.9
(1.2)
P 		185.8
(-0.3)
P 		93.9
(-3)
P 		140
(-1.7)
P 		100.6
(-2.8)
P 		205
C 304
(3)
P 		230.5
(0.9)
P 		129.4
(-1.9)
P 		92.4
(-2.9)
A 		128
(-1.9)
P 		89.1
(-3)
P 		215
avr 307.6
(3) 		240.6
(1.2) 		169.6
(-0.7) 		93.7
(-2.8) 		119.7
(-2.1) 		86.5
(-3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 122.2
(3)
P 		39
(-2.1)
P 		32.3
(-2.5)
A 		24
(-3)
P 		98
B 92.6
(3)
P 		43.6
(-2.1)
A 		36.3
(-2.9)
A 		35.3
(-3)
P 		57
C 133.5
(3)
P 		52.4
(-1.8)
A 		56.4
(-1.6)
A 		32
(-3)
P 		102
avr 116.1
(3) 		45
(-2) 		41.7
(-2.2) 		30.4
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 59
(0.4)
P 		90.5
(3)
P 		42.1
(-1)
M 		24.1
(-2.4)
P 		27.5
(-2.1)
M 		17
(-3)
A 		74
B 104
(3)
P 		78.9
(1.1)
P 		45.1
(-1.5)
P 		24.9
(-3)
P 		56.9
(-0.6)
P 		37.5
(-2)
P 		79
C 112.7
(3)
P 		70.3
(0.3)
P 		32.9
(-2.1)
P 		18.6
(-3)
A 		41.4
(-1.5)
P 		29.8
(-2.3)
P 		94
avr 91.9
(3) 		79.9
(2) 		40
(-1.5) 		22.5
(-3) 		41.9
(-1.3) 		28.1
(-2.5) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179849_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15704
Sequence Type Exemplar sequence
Representative Public ID F32D1.3 NCBI
Target Description F32D1.3 /REP_DB=WormBase Gene ID /WP=CE09867 /TR=O16296 /GB=AAB65353.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071799 NCBI Caenorhabditis elegans F32D1.3 (F32D1.3) mRNA, complete cds. 11/11 None
SNAP00000007311 ENSEMBL cdna:SNAP chromosome:CEL140:V:4341441:4355303:-1 11/11 None
GENEFINDER00000007335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4349623:4361509:-1 11/11 None
F32D1.3 ENSEMBL cdna:known chromosome:CEL140:V:4349598:4361366:-1 gene:F32D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4349679-4361359(-) 99.87 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D1.3
Entrez Gene 178832 Entrez gene
SwissProt O16296 EMBL-EBI
WormBase CE09867 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9843.1.S1_AT similar to CG31690-PB, isoform B cfa
CANINE_2:CFAAFFX.9843.1.S1_S_AT similar to CG31690-PB, isoform B cfa
DROSOPHILA_2:1628782_AT dm
DROSGENOME1:152419_AT dm
CHICKEN:GGAAFFX.6948.1.S1_AT similar to hypothetical protein DKFZp762A217 gga
CHICKEN:GGAAFFX.6948.2.S1_S_AT similar to hypothetical protein DKFZp762A217 gga
CHICKEN:GGAAFFX.6948.3.S1_S_AT similar to hypothetical protein DKFZp762A217 gga
U133_X3P:HS.145014.0.A1_3P_AT hypothetical protein DKFZp762A217 hs
HG-U133_PLUS_2:235775_AT hypothetical protein DKFZp762A217 hs
HG-U133B:235775_AT hypothetical protein DKFZp762A217 hs
HG-U95D:82346_AT hypothetical protein DKFZp762A217 hs
HG-U95E:82703_AT hypothetical protein DKFZp762A217 hs
HG-U133_PLUS_2:232927_AT Hypothetical protein DKFZp762A217 hs
HG-U133B:232927_AT Hypothetical protein DKFZp762A217 hs
HU35KSUBC:RC_W61322_I_AT Hypothetical protein DKFZp762A217 hs
U133_X3P:HS.57837.0.A1_3P_AT Hypothetical protein DKFZp762A217 hs
U133_X3P:HS.301448.0.S1_3P_X_AT Hypothetical protein DKFZp762A217 hs
U133_X3P:HS.301448.0.S1_3P_AT Hypothetical protein DKFZp762A217 hs
U133_X3P:232927_3P_AT Hypothetical protein DKFZp762A217 hs
HG-U133_PLUS_2:228574_AT Hypothetical protein DKFZp762A217 hs
HG-U133B:228574_AT Hypothetical protein DKFZp762A217 hs
HG-U95C:62463_AT Hypothetical protein DKFZp762A217 hs
HG-U95D:80181_AT Hypothetical protein DKFZp762A217 hs
HG-U95C:59264_AT Hypothetical protein DKFZp762A217 hs
HG-U95D:82348_AT Hypothetical protein DKFZp762A217 hs
MOUSE430_2:1429809_AT RIKEN cDNA 8430438D04 gene mm
MOE430B:1429809_AT RIKEN cDNA 8430438D04 gene mm
MOE430B:1441033_AT RIKEN cDNA 8430438D04 gene mm
MOUSE430_2:1441033_AT RIKEN cDNA 8430438D04 gene mm
MG-U74BV2:112082_AT RIKEN cDNA 8430438D04 gene mm
MG-U74CV2:134747_AT RIKEN cDNA 8430438D04 gene mm
MOUSE430_2:1443321_AT RIKEN cDNA 8430438D04 gene, mRNA (cDNA clone IMAGE:5012310) mm
MOE430B:1443321_AT RIKEN cDNA 8430438D04 gene, mRNA (cDNA clone IMAGE:5012310) mm
MG-U74CV2:129346_AT RIKEN cDNA 8430438D04 gene, mRNA (cDNA clone IMAGE:5012310) mm
MG-U74CV2:129843_AT RIKEN cDNA 8430438D04 gene, mRNA (cDNA clone IMAGE:5012310) mm
MOE430B:1443174_AT RIKEN cDNA 8430438D04 gene, mRNA (cDNA clone IMAGE:5012310) mm
MOUSE430_2:1443174_AT RIKEN cDNA 8430438D04 gene, mRNA (cDNA clone IMAGE:5012310) mm
RAE230B:1394937_AT Similar to RIKEN cDNA D330034A10 gene (predicted) rn
RAT230_2:1394937_AT Similar to RIKEN cDNA D330034A10 gene (predicted) rn
RAE230B:1396212_AT Similar to RIKEN cDNA D330034A10 gene (predicted) rn
RAT230_2:1396212_AT Similar to RIKEN cDNA D330034A10 gene (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB65353 Hypothetical protein F32D1.3 [Caenorhabditis elegans] ref|NP_504200.1| F32D1.3 [Caenorhabditis elegans] 0.0
blast CAE56055 Hypothetical protein CBG23627 [Caenorhabditis briggsae] 0.0
blast AAB65351 Hypothetical protein F32D1.1 [Caenorhabditis elegans] ref|NP_504197.1| F32D1.1 [Caenorhabditis elegans] 0.0
blast CAE74191 Hypothetical protein CBG21866 [Caenorhabditis briggsae] 0.0
blast CAD39165 hypothetical protein [Homo sapiens] ref|NP_689801.1| hypothetical protein LOC160335 [Homo sapiens] gb|AAH93854.1| Hypothetical protein LOC160335 [Homo sapiens] gb|AAH93852.1| Hypothetical protein LOC160335 [Homo sapiens] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.1
Pfam IPR001440 EMBL-EBI TPR repeat 0.0019
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.076
Pfam IPR001440 EMBL-EBI TPR repeat 4.7E-4
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.3E-78
Pfam IPR006721 EMBL-EBI Mitochondrial ATP synthase epsilon chain 9.2E-16
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.1
Pfam IPR001440 EMBL-EBI TPR repeat 0.0019
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.076
Pfam IPR001440 EMBL-EBI TPR repeat 4.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.1
Pfam IPR001440 EMBL-EBI TPR repeat 0.0019
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.076
Pfam IPR001440 EMBL-EBI TPR repeat 4.7E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504200.1 7 136-158,190-212,225-242,262-284,305-327,342-364,369-386
F32D1.3 7 136-158,190-212,225-242,262-284,305-327,342-364,369-386
SNAP00000007311 5 21-43,58-77,98-117,140-162,174-196
GENEFINDER00000007335 9 65-87,97-114,127-149,181-203,216-233,253-275,296-318,333-355,360-377
Sequence
Target Sequence 
>C. ELEGANS:179849_S_AT
tgaagcttggcgggccacatttcgagcacactccgagtgttctgaattcaatgggtactt
gttacaatgagctcggcgatgagcaatcggcggagaagtttttcggcaaggcgatcggcg
agaatcatgtcaactcgtatttgacaatggcgcatttgaaaattcggcagaatagaagct
tcgaggtggagaatttgcttcgaaaagcgatgacacttgctccggaatctgtgacagtgc
ttcagaatattgcattagccgagtttcatatgcaaaactacaatcgctcgttgctcttct
atcgaaaagctctccatctggatccaactcatctcgactctctgcaaggaatcgcgaatc
ttctgcaacaaactcagaaccacgtggaatctgaaactttctacagaaaagtgatggaag
ctcaaccgaattcgtatgcggctcacgccaactacggagcaattcttcatcttaatcaga
agtacgatttggctctgaaagaatacgaaatcgcactgatcttggatccaacgagtgacg
tggcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCTTGGCGGGCCACATTTCGA 705 573 1739 Antisense
CACATTTCGAGCACACTCCGAGTGT 490 195 1754 Antisense
AAAGCGATGACACTTGCTCCGGAAT 225 125 1942 Antisense
AAAACTACAATCGCTCGTTGCTCTT 399 131 2012 Antisense
AAAAGCTCTCCATCTGGATCCAACT 79 133 2043 Antisense
TCATCTCGACTCTCTGCAAGGAATC 143 621 2067 Antisense
AGGAATCGCGAATCTTCTGCAACAA 668 53 2085 Antisense
AACCGAATTCGTATGCGGCTCACGC 610 145 2162 Antisense
CACGCCAACTACGGAGCAATTCTTC 96 199 2182 Antisense
CGAAATCGCACTGATCTTGGATCCA 321 253 2244 Antisense
GGATCCAACGAGTGACGTGGCACGA 164 513 2262 Antisense
Sequence Source Affymetrix Proprietary Database