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[179848_at]

Description F34H10.2 /REP_DB=WormBase Gene ID /WP=CE01572 /TR=Q09558 /GB=CAA87035.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      6grp_total > 48      4grp_total > 05      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 197.4
(-1.7)
P 		173.1
(-2.3)
A 		139.1
(-3)
A 		414.5
(3)
P 		275
B 249.6
(-0.2)
P 		151.1
(-2.2)
P 		112.7
(-3)
A 		402.7
(3)
P 		290
C 218.9
(-0.2)
P 		90.1
(-3)
A 		123.6
(-2.3)
A 		370.1
(3)
P 		280
avr 222
(-0.9) 		138.1
(-2.7) 		125.1
(-3) 		395.8
(3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 251.6
(3)
P 		160.7
(-2.1)
P 		151
(-2.6)
P 		144
(-3)
P 		199.3
(0.1)
P 		185.9
(-0.7)
P 		108
B 212.3
(0.5)
P 		194.3
(-0.7)
P 		170.5
(-2.4)
P 		181
(-1.7)
P 		162.8
(-3)
P 		246.5
(3)
P 		84
C 211
(0.6)
P 		186.7
(-0.6)
P 		140.2
(-3)
M 		192
(-0.3)
P 		189
(-0.5)
P 		256.9
(3)
P 		117
avr 225
(2.6) 		180.6
(-0.9) 		153.9
(-3) 		172.3
(-1.5) 		183.7
(-0.6) 		229.8
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 71.9
(3)
P 		37.6
(-2.8)
A 		36.4
(-3)
A 		60.7
(1.1)
P 		36
B 79.6
(2.4)
P 		37.3
(-1.9)
P 		26.1
(-3)
A 		85.8
(3)
P 		60
C 72.5
(3)
P 		25.9
(-3)
A 		43.1
(-0.8)
A 		62.4
(1.7)
P 		47
avr 74.7
(3) 		33.6
(-3) 		35.2
(-2.8) 		69.6
(2.3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 46.4
(-0)
P 		57.2
(2.3)
P 		32.9
(-3)
P 		36.5
(-2.2)
P 		60.2
(3)
P 		45.3
(-0.3)
P 		27
B 73.9
(0.9)
P 		64.7
(-0.2)
P 		41.4
(-3)
P 		48
(-2.2)
P 		66.1
(-0.1)
P 		91.9
(3)
P 		51
C 78.2
(2.1)
P 		57
(-0.5)
P 		35.7
(-3)
M 		38.6
(-2.7)
P 		61.2
(0)
P 		86
(3)
P 		50
avr 66.2
(1.7) 		59.6
(0.6) 		36.7
(-3) 		41
(-2.3) 		62.5
(1.1) 		74.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16801
Sequence Type Exemplar sequence
Representative Public ID F34H10.2 NCBI
Target Description F34H10.2 /REP_DB=WormBase Gene ID /WP=CE01572 /TR=Q09558 /GB=CAA87035.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077222 NCBI Caenorhabditis elegans F34H10.2 (F34H10.2) mRNA, complete cds. 11/11 None
SNAP00000008830 ENSEMBL cdna:SNAP chromosome:CEL140:X:9630355:9630807:1 11/11 None
GENEFINDER00000008837 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9630355:9630807:1 11/11 None
F34H10.2 ENSEMBL cdna:known chromosome:CEL140:X:9630355:9630807:1 gene:F34H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9630354-9630807(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F34H10.2
Entrez Gene 185244 Entrez gene
SwissProt Q09558 EMBL-EBI
WormBase CE01572 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87035 Hypothetical protein F34H10.2 [Caenorhabditis elegans] ref|NP_509623.1| F34H10.2 [Caenorhabditis elegans] 3.0E-44
blast CAE69779 Hypothetical protein CBG16066 [Caenorhabditis briggsae] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:179848_AT
agcagtcattctacttttcgttctatgcttccatcaaaccacgagtgccgactttacgga
tgccgaatctgcgatacaagtgccacgccggagcgccgagatgtactgggtaaaccgtgc
catgccaaacaaatatcggaaatatcgcacctacagtaggagaagtgtttcacaacgttg
gaaacgtctctatccacttccaggtgttctccaatcaatcgcgccggaggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTCATTCTACTTTTCGTTCTA 642 77 30 Antisense
TCGTTCTATGCTTCCATCAAACCAC 678 603 47 Antisense
CAAACCACGAGTGCCGACTTTACGG 195 185 64 Antisense
TTACGGATGCCGAATCTGCGATACA 268 683 83 Antisense
TCTGCGATACAAGTGCCACGCCGGA 291 609 97 Antisense
CCGGAGCGCCGAGATGTACTGGGTA 164 265 117 Antisense
TACTGGGTAAACCGTGCCATGCCAA 33 647 133 Antisense
ATATCGGAAATATCGCACCTACAGT 227 9 162 Antisense
GTTGGAAACGTCTCTATCCACTTCC 569 435 206 Antisense
CACTTCCAGGTGTTCTCCAATCAAT 229 197 224 Antisense
TCCAATCAATCGCGCCGGAGGATAA 474 587 239 Antisense
Sequence Source Affymetrix Proprietary Database