[Home] | [Total List]

[179847_s_at]

Description F53A3.1 /REP_DB=WormBase Gene ID /WP=CE10880 /TR=O17220 /GB=AAB70987.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 32      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 81      6grp_total > 30      4grp_total > 43      6grp_highest_sub > 04      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 181.8
(-3)
P 		250
(3)
P 		196.5
(-1.7)
P 		233.3
(1.5)
P 		68
B 166.5
(-1.5)
P 		240
(3)
P 		141.6
(-3)
P 		195
(0.3)
P 		98
C 172.7
(-0.2)
P 		224.6
(3)
P 		174.6
(-0.1)
P 		127
(-3)
P 		98
avr 173.7
(-2.8) 		238.2
(3) 		170.9
(-3) 		185.1
(-1.7) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 231.7
(0.3)
P 		247
(0.8)
P 		306.6
(3)
P 		243.3
(0.7)
P 		188.3
(-1.3)
P 		140.6
(-3)
P 		166
B 295
(1.3)
P 		336.3
(3)
P 		275.6
(0.5)
P 		304.7
(1.7)
P 		270.2
(0.2)
P 		193
(-3)
P 		143
C 214.4
(-1)
P 		363.9
(3)
P 		281.8
(0.8)
P 		331.3
(2.1)
P 		188.3
(-1.6)
P 		137.3
(-3)
P 		227
avr 247
(0.4) 		315.7
(3) 		288
(2) 		293.1
(2.1) 		215.6
(-0.8) 		157
(-3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 66.2
(3)
P 		54.3
(0.8)
P 		51.4
(0.2)
P 		34.2
(-3)
P 		32
B 53.1
(1.6)
P 		59.3
(3)
P 		32.8
(-3)
P 		41.6
(-1)
P 		27
C 57.2
(2)
P 		64.6
(3)
P 		60.8
(2.5)
P 		21.4
(-3)
P 		43
avr 58.8
(2.9) 		59.4
(3) 		48.3
(0.5) 		32.4
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 42.7
(-2)
P 		87.8
(3)
P 		66.8
(0.6)
P 		61.7
(0.1)
P 		56.8
(-0.5)
P 		34.2
(-3)
P 		54
B 102.7
(1.8)
P 		111.9
(3)
P 		66.9
(-3)
P 		80.7
(-1.2)
P 		109.8
(2.7)
P 		72
(-2.3)
P 		45
C 79.5
(0.1)
P 		111
(3)
P 		71.7
(-0.6)
P 		66.6
(-1.1)
P 		60.9
(-1.6)
P 		46
(-3)
P 		65
avr 75
(-0.2) 		103.6
(3) 		68.5
(-1) 		69.7
(-0.8) 		75.8
(-0.2) 		50.7
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179847_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8271
Sequence Type Exemplar sequence
Representative Public ID F53A3.1 NCBI
Target Description F53A3.1 /REP_DB=WormBase Gene ID /WP=CE10880 /TR=O17220 /GB=AAB70987.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065078 NCBI Caenorhabditis elegans F53A3.1 (F53A3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000027598 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1939572:1943513:-1 11/11 None
F53A3.1 ENSEMBL cdna:known chromosome:CEL140:III:1939558:1943594:-1 gene:F53A3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1939571-1943513(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A3.1
Entrez Gene 175336 Entrez gene
SwissProt O17220 EMBL-EBI
WormBase CE10880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70987 Hypothetical protein F53A3.1 [Caenorhabditis elegans] ref|NP_497479.1| F53A3.1 [Caenorhabditis elegans] 7.0E-76
blast CAE66470 Hypothetical protein CBG11749 [Caenorhabditis briggsae] 9.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497479.1 4 10-31,38-60,75-97,129-148
F53A3.1 4 10-31,38-60,75-97,129-148
GENEFINDER00000027598 4 10-31,38-60,75-97,129-148
Sequence
Target Sequence 
>C. ELEGANS:179847_S_AT
gacgaagccggtgggctggtgtgccacgtggcttcccatgattaagttggctcaggcaat
ttgccatttcattgtgattatggtgtttctcgatggccgtcatcaatggtacatgtacaa
cgccatcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAAGCCGGTGGGCTGGTGTGCC 428 379 15 Antisense
CACGTGGCTTCCCATGATTAAGTTG 438 199 39 Antisense
GGCTTCCCATGATTAAGTTGGCTCA 103 537 44 Antisense
TTCCCATGATTAAGTTGGCTCAGGC 567 697 47 Antisense
ATTTGCCATTTCATTGTGATTATGG 480 17 73 Antisense
TGTGATTATGGTGTTTCTCGATGGC 32 555 87 Antisense
ATTATGGTGTTTCTCGATGGCCGTC 542 11 91 Antisense
GTTTCTCGATGGCCGTCATCAATGG 91 451 99 Antisense
GATGGCCGTCATCAATGGTACATGT 165 407 106 Antisense
GGCCGTCATCAATGGTACATGTACA 472 543 109 Antisense
ATGGTACATGTACAACGCCATCCTC 165 51 120 Antisense
Sequence Source Affymetrix Proprietary Database