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[179846_at]

Description ZC204.4 /REP_DB=WormBase Gene ID /WP=CE15090 /TR=P91535 /GB=AAB37913.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 33.6
(-3)
A 		39.1
(-1.1)
A 		51.3
(3)
A 		49.2
(2.3)
A 		18
B 8.4
(-2.7)
A 		32.7
(3)
A 		7
(-3)
A 		12.4
(-1.7)
A 		26
C 33.9
(3)
A 		17.1
(-2.7)
A 		16.1
(-3)
A 		32.5
(2.5)
A 		18
avr 25.3
(-2.5) 		29.6
(1.4) 		24.8
(-3) 		31.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 8.8
(-2.2)
A 		5.4
(-3)
A 		18.3
(0.1)
A 		7.4
(-2.5)
A 		30.1
(3)
A 		6.9
(-2.6)
A 		25
B 10.9
(-1.5)
A 		4.2
(-3)
A 		12.1
(-1.2)
A 		5.4
(-2.7)
A 		31.1
(3)
A 		9.2
(-1.9)
A 		27
C 3.5
(-3)
A 		12.9
(3)
A 		9.3
(0.7)
A 		9.5
(0.8)
A 		8.5
(0.2)
A 		8.6
(0.3)
A 		9
avr 7.7
(-2.9) 		7.5
(-3) 		13.2
(-0.8) 		7.4
(-3) 		23.2
(3) 		8.2
(-2.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.2
(1.8)
A 		8.5
(-1.7)
A 		13.4
(3)
A 		7.2
(-3)
A 		6
B 2.7
(-2)
A 		8.1
(3)
A 		1.6
(-3)
A 		2.6
(-2.1)
A 		7
C 11.2
(3)
A 		4.9
(-3)
A 		5.6
(-2.3)
A 		5.5
(-2.4)
A 		6
avr 8.7
(3) 		7.2
(0.5) 		6.9
(0) 		5.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-3)
A 		1.9
(-2.8)
A 		4
(-1.1)
A 		1.9
(-2.8)
A 		9.1
(3)
A 		1.7
(-2.9)
A 		8
B 3.8
(-1.7)
A 		1.4
(-3)
A 		2.9
(-2.2)
A 		1.4
(-3)
A 		12.6
(3)
A 		3.4
(-1.9)
A 		11
C 1.3
(-3)
A 		3.9
(3)
A 		2.4
(-0.5)
A 		1.9
(-1.6)
A 		2.8
(0.5)
A 		2.9
(0.7)
A 		3
avr 2.2
(-2.5) 		2.4
(-2.4) 		3.1
(-1.7) 		1.7
(-3) 		8.2
(3) 		2.7
(-2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4804
Sequence Type Exemplar sequence
Representative Public ID ZC204.4 NCBI
Target Description ZC204.4 /REP_DB=WormBase Gene ID /WP=CE15090 /TR=P91535 /GB=AAB37913.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027319
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC204.4a ENSEMBL cdna:known chromosome:CEL140:II:1636695:1638970:1 gene:ZC204.4 None
NM_001027319 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-20) (srg-20) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027320 3/11 Cross Hyb Matching Probes None
NM_070478 1/11 Cross Hyb Matching Probes A B 
SNAP00000031402 1/11 Cross Hyb Matching Probes None
ZC204.4b 3/11 Cross Hyb Matching Probes None
Y105C5A.11 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1636693-1638997(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC204.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37913 Serpentine receptor, class g (gamma) protein 20, isoform a [Caenorhabditis elegans] ref|NP_001022490.1| Serpentine Receptor, class G (gamma) family member (srg-20) [Caenorhabditis elegans] sp|P91535|SRG20_CAEEL Serpentine receptor class gamma-20 (Protein srg-20) 0.0
blast AAW88386 Serpentine receptor, class g (gamma) protein 20, isoform b [Caenorhabditis elegans] ref|NP_001022491.1| Serpentine Receptor, class G (gamma) family member (srg-20) [Caenorhabditis elegans] 0.0
blast CAB60301 Hypothetical protein Y105C5A.11 [Caenorhabditis elegans] ref|NP_502879.2| Serpentine Receptor, class G (gamma) family member (srg-19) [Caenorhabditis elegans] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022490.1 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
ZC204.4a 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
Sequence
Target Sequence 
>C. ELEGANS:179846_AT
ttgacgttctctacgtctacagcccgatcgcattgatcctgatgaatcggcagttgcgaa
gggatattttccatctgaaaggtgacgatcctgggttcggctttacaaaatttccgatta
cgtcacttgaggattatcagtttcttgagcgattcccttttttagaagatctagcaattt
ccaatgcccccagtgctccagttcttaaattcattcttactcggagcttcaacagactgg
aacttcacaggattaaagttacactgaacgttatactaatctcaaatagttcagttttct
ctatacaacaccacctaatttccgacgaagacatcaatatttttatgaaacattggatca
aaggatcccatcctcatttgcaagaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACGTTCTCTACGTCTACAGCCC 641 705 869 Antisense
GAAAGGTGACGATCCTGGGTTCGGC 289 359 945 Antisense
GATCCTGGGTTCGGCTTTACAAAAT 545 415 955 Antisense
AAAATTTCCGATTACGTCACTTGAG 103 135 975 Antisense
TTTCTTGAGCGATTCCCTTTTTTAG 61 673 1009 Antisense
AGATCTAGCAATTTCCAATGCCCCC 367 67 1035 Antisense
CCCAGTGCTCCAGTTCTTAAATTCA 238 259 1057 Antisense
AAATTCATTCTTACTCGGAGCTTCA 54 117 1075 Antisense
CAGTTTTCTCTATACAACACCACCT 236 207 1160 Antisense
CACCACCTAATTTCCGACGAAGACA 544 193 1177 Antisense
ATCCCATCCTCATTTGCAAGAACTC 562 37 1233 Antisense
Sequence Source Affymetrix Proprietary Database