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[179845_at]

Description T24C4.2 /REP_DB=WormBase Gene ID /WP=CE19593 /TR=Q9TZ37 /GB=AAC68921.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 49.9
(1.9)
A 		8.7
(-3)
A 		59.3
(3)
A 		14.9
(-2.3)
A 		51
B 45.8
(-3)
A 		95.4
(3)
A 		71.3
(0.1)
A 		72.4
(0.2)
A 		50
C 63.8
(1.5)
A 		69.8
(2.1)
A 		20.6
(-3)
A 		78.5
(3)
A 		58
avr 53.2
(-0.8) 		58
(3) 		50.4
(-3) 		55.3
(0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 44.3
(-0.9)
A 		56.5
(-0.2)
A 		7.3
(-3)
A 		13.6
(-2.6)
A 		59.8
(0)
A 		111.4
(3)
A 		104
B 29.2
(-2.7)
A 		31
(-2.3)
A 		27.7
(-3)
A 		53.4
(2.4)
A 		45.4
(0.7)
A 		56.4
(3)
A 		29
C 61.4
(0.4)
A 		39.2
(-1.1)
A 		61.1
(0.4)
A 		13.3
(-3)
A 		32.9
(-1.6)
A 		97.1
(3)
A 		84
avr 45
(-1.2) 		42.2
(-1.5) 		32
(-2.5) 		26.8
(-3) 		46
(-1.1) 		88.3
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 18.2
(3)
A 		1.9
(-3)
A 		15.5
(2)
A 		2.2
(-2.9)
A 		16
B 14.6
(-3)
A 		23.6
(3)
A 		16.5
(-1.7)
A 		15.4
(-2.5)
A 		9
C 21.1
(3)
A 		20.1
(2.6)
A 		7.2
(-3)
A 		13.2
(-0.4)
A 		14
avr 18
(3) 		15.2
(0.8) 		13.1
(-0.8) 		10.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.2
(-1.4)
A 		20.1
(1.4)
A 		1.6
(-3)
A 		3.4
(-2.6)
A 		18
(0.9)
A 		27.1
(3)
A 		26
B 10.2
(-1.5)
A 		10.3
(-1.5)
A 		6.7
(-3)
A 		14.1
(0.1)
A 		18.4
(1.9)
A 		21
(3)
A 		14
C 22.7
(1)
A 		12
(-1.1)
A 		15.6
(-0.4)
A 		2.7
(-3)
A 		10.6
(-1.4)
A 		32.5
(3)
A 		30
avr 13.7
(-0.9) 		14.1
(-0.8) 		8
(-2.6) 		6.7
(-3) 		15.7
(-0.3) 		26.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8259
Sequence Type Exemplar sequence
Representative Public ID T24C4.2 NCBI
Target Description T24C4.2 /REP_DB=WormBase Gene ID /WP=CE19593 /TR=Q9TZ37 /GB=AAC68921.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064879 NCBI Caenorhabditis elegans T24C4.2 (T24C4.2) mRNA, complete cds. 11/11 None
SNAP00000044712 ENSEMBL cdna:SNAP chromosome:CEL140:III:867500:869848:-1 11/11 None
GENEFINDER00000044729 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:867500:869848:-1 11/11 None
T24C4.2 ENSEMBL cdna:known chromosome:CEL140:III:867500:869848:-1 gene:T24C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:867499-869848(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C4.2
Entrez Gene 188843 Entrez gene
SwissProt Q9TZ37 EMBL-EBI
WormBase CE19593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68921 Hypothetical protein T24C4.2 [Caenorhabditis elegans] ref|NP_497280.1| T24C4.2 [Caenorhabditis elegans] 0.0
blast CAE56479 Hypothetical protein CBG24193 [Caenorhabditis briggsae] 8.0E-73
Sequence
Target Sequence 
>C. ELEGANS:179845_AT
actaggccctacgaagtatctccttcagctcctatttcggaaattactacaccattcgtt
cttccgacacaaaaagttgggcttaacgatttggtgccaacgtcacagttctctccaatg
gattaccagtccttgcaaaatcagattatcctaaaccaagtgaaactcaacgcaatgacc
aataatgtttacaatccatttgggaactggccagcaagttcattggttccaactccagca
ccaccattcctaactccaactccttcccaagtgtcaccagcactttcatcttcagtagat
gagaatgaagctccaaaaatatttcactcactcgaagcagtccgtccaattcctcttcgt
ccctctcaaaacagtgctttctatcaaatgctcaactcctcatcaacttccccgattatt
gcagtcactaaggcggaagttgattcggttcttggagcagcttccagactgcttaatgac
aaccatttgccagaagatgttcttcacagtcgcgtcaaacagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTAGGCCCTACGAAGTATCTCCTT 614 99 727 Antisense
CTCCTTCAGCTCCTATTTCGGAAAT 686 233 746 Antisense
GAAATTACTACACCATTCGTTCTTC 172 363 766 Antisense
CGTCACAGTTCTCTCCAATGGATTA 20 247 827 Antisense
AGTTCATTGGTTCCAACTCCAGCAC 493 63 943 Antisense
TCACCAGCACTTTCATCTTCAGTAG 633 625 1000 Antisense
TATTTCACTCACTCGAAGCAGTCCG 343 661 1046 Antisense
ATCAACTTCCCCGATTATTGCAGTC 205 27 1128 Antisense
TGATTCGGTTCTTGGAGCAGCTTCC 333 563 1167 Antisense
GCTTCCAGACTGCTTAATGACAACC 685 305 1186 Antisense
TTCTTCACAGTCGCGTCAAACAGTT 245 691 1226 Antisense
Sequence Source Affymetrix Proprietary Database