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[179844_at]

Description C49C8.3 /REP_DB=WormBase Gene ID /WP=CE08838 /TR=Q18704 /GB=AAB03124.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 59.5
(2.4)
A 		65
(3)
A 		55.7
(2)
A 		11
(-3)
A 		54
B 38
(-3)
A 		60.6
(-1.2)
A 		47.7
(-2.2)
A 		112.9
(3)
A 		75
C 24.6
(-3)
A 		47.8
(-2.1)
A 		30.3
(-2.8)
A 		179.5
(3)
M 		155
avr 40.7
(-3) 		57.8
(-1.3) 		44.6
(-2.6) 		101.1
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 67.3
(2.3)
A 		38.5
(-1.6)
A 		27.8
(-3)
A 		70.5
(2.7)
P 		64.3
(1.9)
A 		72.7
(3)
M 		45
B 42
(-3)
A 		48
(-2.5)
A 		58.6
(-1.6)
A 		52.8
(-2.1)
A 		76.5
(-0.2)
P 		115.2
(3)
P 		73
C 27.6
(-3)
A 		82.2
(-0)
A 		62.8
(-1.1)
A 		47.5
(-1.9)
A 		71.6
(-0.6)
A 		137.1
(3)
P 		110
avr 45.6
(-3) 		56.2
(-2) 		49.7
(-2.6) 		56.9
(-1.9) 		70.8
(-0.6) 		108.3
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.7
(3)
A 		14.1
(0.7)
A 		14.6
(0.9)
A 		1.6
(-3)
A 		20
B 12.1
(-2.5)
A 		15
(-1.2)
A 		11.1
(-3)
A 		24.1
(3)
A 		13
C 8.1
(-3)
A 		13.7
(-1.5)
A 		10.6
(-2.3)
A 		30.3
(3)
M 		22
avr 14
(-1.3) 		14.3
(-1) 		12.1
(-3) 		18.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 12.4
(-0.1)
A 		13.7
(0.4)
A 		6
(-3)
A 		17.9
(2.3)
P 		19.4
(3)
A 		17.7
(2.2)
M 		13
B 14.6
(-2.9)
A 		16
(-2.6)
A 		14.2
(-3)
A 		14
(-3)
A 		31.1
(0.5)
P 		43
(3)
P 		29
C 10.2
(-2.9)
A 		25.1
(-0.4)
A 		16
(-1.9)
A 		9.5
(-3)
A 		23.2
(-0.7)
A 		45.9
(3)
P 		36
avr 12.4
(-2.9) 		18.3
(-1.4) 		12.1
(-3) 		13.8
(-2.6) 		24.6
(0.2) 		35.5
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9486
Sequence Type Exemplar sequence
Representative Public ID C49C8.3 NCBI
Target Description C49C8.3 /REP_DB=WormBase Gene ID /WP=CE08838 /TR=Q18704 /GB=AAB03124.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069078 NCBI Caenorhabditis elegans C49C8.3 (C49C8.3) mRNA, complete cds. 11/11 None
SNAP00000039870 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8644723:8645252:1 11/11 None
GENEFINDER00000039883 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8644723:8645252:1 11/11 None
C49C8.3 ENSEMBL cdna:known chromosome:CEL140:IV:8644723:8645252:1 gene:C49C8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8644728-8645258(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C8.3
Entrez Gene 183601 Entrez gene
SwissProt Q18704 EMBL-EBI
WormBase CE08838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03124 Hypothetical protein C49C8.3 [Caenorhabditis elegans] ref|NP_501479.1| C49C8.3 [Caenorhabditis elegans] 7.0E-90
Sequence
Target Sequence 
>C. ELEGANS:179844_AT
gatgaatccgaaccgcatgagagtgatgttgccgaaatgaggtatgaatacacgaaagat
tgggatcctttcatggtgaaaattggaaatagattggtgcgaggaactgaagtggaaaaa
gcaatcaagtactactataaagatggactgaagcctcctgcgaatggaaagtcaaaacct
agaaaattcagttccttgagcgaaagatatcgatttgtcaaaaatgaaaatgatttgaag
aaaattcgagaaatgaaaaagaacgggttgaaattcgatgccagtcatatgaggtttttc
attggtttagaaatggaaattgaaacggagaagcggattgctgatggagaatcgattact
attaaggatcatctggaaatgttcgaacgaatccgagaagatcacaaaattcccaatact
atcaccgccggagtcaactgggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATCCGAACCGCATGAGAGTG 605 411 19 Antisense
ATGAGAGTGATGTTGCCGAAATGAG 165 45 35 Antisense
AGATTGGGATCCTTTCATGGTGAAA 502 65 75 Antisense
GATTGGTGCGAGGAACTGAAGTGGA 19 435 110 Antisense
AAAGATGGACTGAAGCCTCCTGCGA 425 121 157 Antisense
GAAGCCTCCTGCGAATGGAAAGTCA 431 343 168 Antisense
GAAAATTCAGTTCCTTGAGCGAAAG 527 353 200 Antisense
ACGGGTTGAAATTCGATGCCAGTCA 284 91 281 Antisense
GAAGCGGATTGCTGATGGAGAATCG 577 343 348 Antisense
CAAAATTCCCAATACTATCACCGCC 347 187 423 Antisense
TATCACCGCCGGAGTCAACTGGGTT 380 643 438 Antisense
Sequence Source Affymetrix Proprietary Database