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[179843_s_at]

Description Y70C5A.2 /REP_DB=WormBase Gene ID /WP=CE16671 /TR=O62495 /GB=CAB16532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 507
(3)
P 		359.5
(0.9)
P 		290.9
(-0)
P 		78.5
(-3)
A 		429
B 517.9
(3)
P 		502.8
(2.8)
P 		387.1
(1.3)
P 		48.2
(-3)
A 		470
C 456.2
(3)
P 		392.2
(2)
P 		346.8
(1.4)
P 		52.5
(-3)
A 		404
avr 493.7
(3) 		418.2
(2) 		341.6
(0.9) 		59.7
(-3) 		434

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 333.2
(1.3)
P 		363.3
(1.8)
P 		425.6
(3)
P 		297.8
(0.6)
P 		176.3
(-1.6)
P 		102
(-3)
P 		324
B 419.1
(3)
P 		405.6
(2.7)
P 		289.2
(0.3)
P 		181.5
(-1.9)
P 		192.7
(-1.6)
P 		126.1
(-3)
P 		293
C 344.6
(1.2)
P 		454.7
(3)
P 		309.3
(0.7)
P 		236.8
(-0.5)
P 		124.9
(-2.3)
P 		80.6
(-3)
P 		374
avr 365.6
(2.2) 		407.9
(3) 		341.4
(1.7) 		238.7
(-0.3) 		164.6
(-1.8) 		102.9
(-3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 184.6
(3)
P 		78
(-0.7)
P 		76.1
(-0.8)
P 		11.5
(-3)
A 		173
B 165.1
(3)
P 		124.2
(1.4)
P 		89.7
(0.1)
P 		10.3
(-3)
A 		155
C 151
(3)
P 		112.8
(1.4)
P 		120.9
(1.7)
P 		8.8
(-3)
A 		142
avr 166.9
(3) 		105
(0.6) 		95.6
(0.3) 		10.2
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 61.4
(-0.9)
P 		129.2
(3)
P 		92.7
(0.9)
P 		75.5
(-0.1)
P 		53.2
(-1.4)
P 		24.8
(-3)
P 		104
B 145.8
(3)
P 		135
(2.3)
P 		70.2
(-1.6)
P 		48.1
(-2.9)
P 		78.3
(-1.1)
P 		47
(-3)
P 		99
C 127.7
(2.4)
P 		138.8
(3)
P 		78.7
(-0.2)
P 		47.6
(-1.9)
P 		40.4
(-2.3)
P 		27
(-3)
P 		112
avr 111.6
(1.7) 		134.3
(3) 		80.5
(-0.2) 		57.1
(-1.6) 		57.3
(-1.6) 		32.9
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14218
Sequence Type Exemplar sequence
Representative Public ID Y70C5A.2 NCBI
Target Description Y70C5A.2 /REP_DB=WormBase Gene ID /WP=CE16671 /TR=O62495 /GB=CAB16532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074803 NCBI Caenorhabditis elegans Y70C5A.2 (Y70C5A.2) mRNA, complete cds. 11/11 None
SNAP00000020485 ENSEMBL cdna:SNAP chromosome:CEL140:V:16620956:16622868:-1 11/11 None
GENEFINDER00000020488 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16620956:16625793:-1 11/11 None
Y70C5A.2 ENSEMBL cdna:known chromosome:CEL140:V:16620930:16625513:-1 gene:Y70C5A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16620955-16625513(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y70C5A.2
Entrez Gene 180114 Entrez gene
SwissProt O62495 EMBL-EBI
WormBase CE16671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 0.0
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 1.0E-144
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 1.0E-142
blast CAE61207 Hypothetical protein CBG04997 [Caenorhabditis briggsae] 1.0E-131
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 1.0E-129
blast CAE61207 Hypothetical protein CBG04997 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-32
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-32
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-32
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507204.1 7 21-43,58-80,111-130,166-188,209-231,246-268,459-481
Y70C5A.2 7 21-43,58-80,111-130,166-188,209-231,246-268,459-481
GENEFINDER00000020488 8 20-38,51-73,93-115,147-166,202-224,245-267,282-304,495-517
Sequence
Target Sequence 
>C. ELEGANS:179843_S_AT
gaagaatcttgacccagctgaattgaatgtcattgaaattcaaaaaccaaagagttccct
catatatcgaagcttggacatcaatgaaatttcaatactgaatcaatggaataacgcaaa
agaactattgtgtgagcctccaattgctgtgtatcaaattgaatgtttgtcacatttctc
aatgatcgatgttcacctattcacgcttttattacaagacatggtatatttgaaaaacaa
attcctgagctcccgtacttttaccaagtgcaaaatagtttttgaggttaatgatatgaa
tgaaaacatattcgaggaaaacggcttgggatttgcgcacctgcgttcaccttcatcatc
aggtcgaccaagtgtttggttttttcaatatccgaacaacagtgatcttttacatattct
atactatgagcatcgaagtattgctttgtctcgtattcctagattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAATCTTGACCCAGCTGAATTG 223 341 2625 Antisense
GAGTTCCCTCATATATCGAAGCTTG 90 399 2676 Antisense
AAAAGAACTATTGTGTGAGCCTCCA 193 133 2742 Antisense
GTGAGCCTCCAATTGCTGTGTATCA 323 483 2756 Antisense
CATTTCTCAATGATCGATGTTCACC 534 215 2797 Antisense
TGTTCACCTATTCACGCTTTTATTA 515 561 2814 Antisense
GGAAAACGGCTTGGGATTTGCGCAC 632 527 2940 Antisense
GTTCACCTTCATCATCAGGTCGACC 84 445 2969 Antisense
TCCGAACAACAGTGATCTTTTACAT 425 593 3015 Antisense
GCATCGAAGTATTGCTTTGTCTCGT 546 309 3054 Antisense
GCTTTGTCTCGTATTCCTAGATTTA 150 305 3067 Antisense
Sequence Source Affymetrix Proprietary Database