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[179842_s_at]

Description F13H6.5 /REP_DB=WormBase Gene ID /WP=CE09377 /TR=O16353 /GB=AAB65886.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 04      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 139.4
(-1.4)
P 		93.5
(-2.3)
P 		62.6
(-3)
A 		346
(3)
P 		283
B 159.2
(-0.8)
P 		97.5
(-2.4)
A 		72.3
(-3)
A 		308
(3)
P 		236
C 182.3
(-0.9)
P 		86.4
(-3)
A 		90
(-2.9)
A 		360.7
(3)
P 		274
avr 160.3
(-1.1) 		92.5
(-2.6) 		75
(-3) 		338.2
(3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 93.2
(-2)
P 		103.3
(-1.6)
P 		66.2
(-3)
P 		85.9
(-2.2)
P 		222
(3)
P 		101
(-1.7)
P 		156
B 100.7
(-1.8)
A 		78.7
(-3)
P 		111.3
(-1.2)
P 		83.9
(-2.7)
P 		189.3
(3)
P 		119.6
(-0.8)
P 		111
C 103.6
(-1)
A 		129.8
(0.5)
P 		66.9
(-3)
A 		104.3
(-0.9)
P 		175
(3)
P 		131.8
(0.6)
P 		108
avr 99.2
(-2.1) 		103.9
(-1.8) 		81.5
(-3) 		91.4
(-2.5) 		195.4
(3) 		117.5
(-1.1) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 50.8
(3)
P 		20.3
(-2.3)
P 		16.4
(-3)
A 		50.6
(3)
P 		34
B 50.8
(1.2)
P 		24.1
(-2.1)
A 		16.8
(-3)
A 		65.6
(3)
P 		49
C 60.4
(2.9)
P 		24.8
(-3)
A 		31.4
(-1.9)
A 		60.8
(3)
P 		36
avr 54
(2.2) 		23.1
(-2.7) 		21.5
(-3) 		59
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 17.2
(-2.7)
P 		36.7
(-0.5)
P 		14.4
(-3)
P 		21.8
(-2.2)
P 		67
(3)
P 		24.6
(-1.8)
P 		53
B 35
(-1.6)
A 		26.2
(-2.6)
P 		27
(-2.5)
P 		22.2
(-3)
P 		76.9
(3)
P 		44.6
(-0.5)
P 		55
C 38.4
(0.2)
A 		39.6
(0.4)
P 		17
(-3)
A 		21
(-2.4)
P 		56.6
(3)
P 		44.1
(1.1)
P 		40
avr 30.2
(-1.6) 		34.2
(-1.1) 		19.5
(-3) 		21.7
(-2.7) 		66.8
(3) 		37.8
(-0.7) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179842_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12331
Sequence Type Exemplar sequence
Representative Public ID F13H6.5 NCBI
Target Description F13H6.5 /REP_DB=WormBase Gene ID /WP=CE09377 /TR=O16353 /GB=AAB65886.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072222 NCBI Caenorhabditis elegans F13H6.5 (F13H6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000034396 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6374943:6377527:-1 11/11 None
F13H6.5 ENSEMBL cdna:known chromosome:CEL140:V:6374706:6377527:-1 gene:F13H6.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034394 3/11 Cross Hyb Matching Probes None
SNAP00000034395 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6374942-6377527(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13H6.5
Entrez Gene 179021 Entrez gene
SwissProt O16353 EMBL-EBI
WormBase CE09377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65886 Hypothetical protein F13H6.5 [Caenorhabditis elegans] ref|NP_504623.1| F13H6.5 [Caenorhabditis elegans] 0.0
blast CAE71870 Hypothetical protein CBG18923 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504623.1 6 72-94,157-179,188-210,256-278,298-320,335-357
F13H6.5 6 72-94,157-179,188-210,256-278,298-320,335-357
GENEFINDER00000034396 6 72-94,157-179,188-210,256-278,298-320,335-357
Sequence
Target Sequence 
>C. ELEGANS:179842_S_AT
agaaaatgctccttgttggttcctgcaatcagcgtttcgtgccagaaataatccgtacta
tgagatttatcgacggttctatgcaaccactactatggctgtttccatagtcattccaac
aattgccatgcttgtttgcacagtgcttattatcaagaaattcacgttcaagaacctcgg
agaaacgttctctcaacgtcggaagtgtgtgatccgaatgacagttgccacaacgctcac
tcatttgttttttgaaggaccagctacgttaactcactcagcaagtgctattcagggaga
caactacagttttctgatgtgcgtgcttaatcatggaaacaatttgggatctctggtcaa
tgccaccattccattctttgtcttcctcttctgcaaccaacaattccggcatatgactgt
tatgtatatcaaggctgtgatacaaacggatcaagtaaaacgaaaatcatatttctctca
agcaggaatgcgttgtggtcgaatgtctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAATGCTCCTTGTTGGTTCCTG 49 73 693 Antisense
TTCCTGCAATCAGCGTTTCGTGCCA 468 699 712 Antisense
GCAACCACTACTATGGCTGTTTCCA 538 319 775 Antisense
TGGCTGTTTCCATAGTCATTCCAAC 707 543 788 Antisense
TGCCATGCTTGTTTGCACAGTGCTT 343 585 816 Antisense
GAATGACAGTTGCCACAACGCTCAC 238 331 908 Antisense
CAACGCTCACTCATTTGTTTTTTGA 522 187 923 Antisense
GACCAGCTACGTTAACTCACTCAGC 589 383 950 Antisense
TTGGGATCTCTGGTCAATGCCACCA 386 707 1036 Antisense
CCTCTTCTGCAACCAACAATTCCGG 225 267 1077 Antisense
GAATGCGTTGTGGTCGAATGTCTCG 354 331 1178 Antisense
Sequence Source Affymetrix Proprietary Database