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[179841_s_at]

Description T24C4.6 /REP_DB=WormBase Gene ID /WP=CE19597 /TR=Q9TZ32 /GB=AAC68925.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 85      6grp_total > 49      4grp_total > 18      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 613
1 2 3 4 range
A 932.3
(2.7)
P 		885.7
(1.2)
P 		748.6
(-3)
P 		942.3
(3)
P 		194
B 578
(-3)
P 		964.2
(0.8)
P 		689.2
(-1.9)
P 		1191.2
(3)
P 		613
C 637.5
(-3)
P 		843
(-0.3)
P 		816
(-0.6)
P 		1089.8
(3)
P 		452
avr 715.9
(-3) 		897.6
(0) 		751.3
(-2.4) 		1074.4
(3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 755.3
(1)
P 		690.2
(0)
P 		483
(-3)
P 		572
(-1.7)
P 		733.1
(0.7)
P 		893.9
(3)
P 		411
B 890.2
(3)
P 		717.2
(-1.4)
P 		703.3
(-1.8)
P 		694.6
(-2)
P 		655.1
(-3)
P 		794.9
(0.6)
P 		235
C 874.7
(3)
P 		684.4
(-1.8)
P 		673.8
(-2.1)
P 		637.1
(-3)
P 		816.5
(1.5)
P 		829.4
(1.9)
P 		238
avr 840.1
(3) 		697.3
(-0.9) 		620
(-3) 		634.6
(-2.6) 		734.9
(0.1) 		839.4
(3) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 339.5
(3)
P 		192.3
(-1.4)
P 		195.7
(-1.3)
P 		137.9
(-3)
P 		202
B 184.3
(-1.4)
P 		238.1
(2)
P 		159.7
(-3)
P 		253.8
(3)
P 		94
C 211
(-1.4)
P 		242.4
(0.5)
P 		284.4
(3)
P 		183.8
(-3)
P 		101
avr 244.9
(3) 		224.3
(0.7) 		213.3
(-0.6) 		191.8
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 139.2
(-1.5)
P 		245.5
(3)
P 		105.2
(-3)
P 		145.1
(-1.3)
P 		221.2
(2)
P 		217.6
(1.8)
P 		140
B 309.7
(3)
P 		238.7
(-0.1)
P 		170.8
(-3)
P 		184
(-2.4)
P 		266.2
(1.1)
P 		296.4
(2.4)
P 		139
C 324.2
(3)
P 		208.8
(-0.5)
P 		171.5
(-1.7)
P 		128.1
(-3)
P 		264.2
(1.2)
P 		277.7
(1.6)
P 		196
avr 257.7
(2.7) 		231
(1.3) 		149.2
(-3) 		152.4
(-2.8) 		250.5
(2.3) 		263.9
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179841_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8236
Sequence Type Exemplar sequence
Representative Public ID T24C4.6 NCBI
Target Description T24C4.6 /REP_DB=WormBase Gene ID /WP=CE19597 /TR=Q9TZ32 /GB=AAC68925.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171079(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171079 NCBI Caenorhabditis elegans T24C4.6a (T24C4.6) mRNA, complete cds. 9/11 None
T24C4.6a ENSEMBL cdna:known chromosome:CEL140:III:881433:886924:-1 gene:T24C4.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171078 7/11 Cross Hyb Matching Probes None
SNAP00000044718 7/11 Cross Hyb Matching Probes None
GENEFINDER00000044726 7/11 Cross Hyb Matching Probes None
T24C4.6b 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175249 2 1 NM_171079 179841_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:881949-886924(-) 98.08 100.0
Public Domain and Genome References
Ensembl T24C4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68925 Hypothetical protein T24C4.6a [Caenorhabditis elegans] ref|NP_741090.2| T24C4.6a [Caenorhabditis elegans] 0.0
blast AAL56626 Hypothetical protein T24C4.6b [Caenorhabditis elegans] ref|NP_741089.1| T24C4.6b [Caenorhabditis elegans] 0.0
blast CAE69147 Hypothetical protein CBG15177 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741090.2 1 13-32
T24C4.6a 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:179841_S_AT
cacccgccgctttataaattatcgttcattccgcccgattttacggctcttaccacttta
tcatgcttatgcgagtcaacactgggcagtttgggcactggctaacttgacaacaaccga
cggagaaaaatattgcgcgtatgtacgtgatgaaggaggtgttcctctgctcgaggaact
tgtttccaacgcaatcactaccaccgacattcgaacgctggccaatacggtgctcgagaa
tatcagaaacgtcgaaaataaaaaccccgtaaatcgacaccgacgcctgcgctatgagat
atttcgttttgatggatttttaatacatttcgcgacatacttgaataaccccataaacat
tagagataaattgggtgaaactcttaacaaaaacagtgttgtagagctcggaaagcggcg
atccgacctcaaaagaggtctcgtgatcctgccgatgatggtgacgatgagtattgatag
ctgtcttgacgtctgctcttcctccccccatacgcaatccgaaatcaattcctgccgatc
tagcacattcctcgaattctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCCGCCGCTTTATAAATTATCGT 670 199 2433 Antisense
TTTACGGCTCTTACCACTTTATCAT 363 673 2472 Antisense
GGGCACTGGCTAACTTGACAACAAC 506 493 2525 Antisense
GGAACTTGTTTCCAACGCAATCACT 328 529 2607 Antisense
GCTGGCCAATACGGTGCTCGAGAAT 580 293 2649 Antisense
CACCGACGCCTGCGCTATGAGATAT 53 201 2710 Antisense
TCGCGACATACTTGAATAACCCCAT 660 597 2762 Antisense
GTGATCCTGCCGATGATGGTGACGA 209 485 2875 Antisense
TGATAGCTGTCTTGACGTCTGCTCT 118 565 2907 Antisense
ATCAATTCCTGCCGATCTAGCACAT 37 27 2956 Antisense
CTAGCACATTCCTCGAATTCTCCAA 336 225 2972 Antisense
Sequence Source Affymetrix Proprietary Database