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[179839_at]

Description M01G12.3 /REP_DB=WormBase Gene ID /WP=CE18068 /TR=O62310 /GB=CAB04612.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 43      6grp_cgc > 81      6grp_cgc_sub > 03      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 80.5
(-3)
A 		104.9
(3)
A 		93.8
(0.3)
A 		81.8
(-2.7)
A 		24
B 84
(-2.1)
A 		160.6
(3)
P 		71.1
(-2.9)
A 		70.1
(-3)
A 		91
C 65.6
(-3)
A 		158.6
(3)
P 		98.5
(-0.9)
A 		94
(-1.2)
A 		93
avr 76.7
(-3) 		141.4
(3) 		87.8
(-2) 		82
(-2.5) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 87.6
(3)
A 		37.8
(-2.2)
A 		52.9
(-0.6)
A 		29.7
(-3)
A 		66.8
(0.8)
A 		31.3
(-2.8)
A 		58
B 66
(3)
P 		22.8
(-3)
A 		55.6
(1.6)
A 		42.5
(-0.3)
A 		37.9
(-0.9)
A 		37.1
(-1)
A 		43
C 43.6
(-1)
A 		95.4
(1.9)
P 		115.7
(3)
A 		87.1
(1.4)
A 		7.9
(-3)
A 		69.1
(0.4)
A 		108
avr 65.7
(1.5) 		52
(-0.7) 		74.7
(3) 		53.1
(-0.5) 		37.5
(-3) 		45.8
(-1.7) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 29.3
(3)
A 		22.8
(0.7)
A 		24.5
(1.3)
A 		12
(-3)
A 		17
B 26.8
(-0.1)
A 		39.7
(3)
P 		16.5
(-2.6)
A 		14.9
(-3)
A 		25
C 21.7
(-1.8)
A 		45.6
(3)
P 		34.3
(0.7)
A 		15.9
(-3)
A 		30
avr 25.9
(0.2) 		36
(3) 		25.1
(-0) 		14.3
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.1
(1.1)
A 		13.4
(-0.2)
A 		11.5
(-1.1)
A 		7.5
(-3)
A 		20.2
(3)
A 		7.6
(-3)
A 		13
B 23
(3)
P 		7.6
(-3)
A 		13.5
(-0.7)
A 		11.3
(-1.6)
A 		15.4
(0)
A 		13.8
(-0.6)
A 		15
C 16.2
(0)
A 		29.1
(2.9)
P 		29.4
(3)
A 		17.5
(0.3)
A 		2.6
(-3)
A 		23.1
(1.6)
A 		27
avr 18.4
(3) 		16.7
(1.4) 		18.1
(2.7) 		12.1
(-3) 		12.7
(-2.4) 		14.8
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.980
Sequence Type Exemplar sequence
Representative Public ID M01G12.3 NCBI
Target Description M01G12.3 /REP_DB=WormBase Gene ID /WP=CE18068 /TR=O62310 /GB=CAB04612.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060660
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024234 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12134577:12139503:1 10/11 None
SNAP00000024228 ENSEMBL cdna:SNAP chromosome:CEL140:I:12134619:12137087:1 10/11 None
M01G12.3 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12134577:12137087:1 gene:M01G12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12134507-12137018(+) 98.81 100.0
Public Domain and Genome References
Ensembl M01G12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23663 hypothetical protein M01G12.3 - Caenorhabditis elegans 1.0E-153
blast CAB04614 Hypothetical protein M01G12.5 [Caenorhabditis elegans] ref|NP_493066.1| M01G12.5 [Caenorhabditis elegans] 1.0E-152
blast T23663 hypothetical protein M01G12.3 - Caenorhabditis elegans 1.0E-147
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 1.0E-145
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 1.0E-140
blast AAG24109 Serpentine receptor, class t protein 19 [Caenorhabditis elegans] ref|NP_504182.1| Serpentine Receptor, class T family member (srt-19) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.5E-101
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.5E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024234 7 45-67,80-102,117-139,160-182,213-230,251-273,278-300
SNAP00000024228 7 31-53,66-88,103-125,146-168,199-216,237-259,264-286
Sequence
Target Sequence 
>C. ELEGANS:179839_AT
ctctactcaaaactccagcctataaagtgatgttagcattggcgatctatgatataacct
gcatattcatgcattcaatcttcaccggtttcctaggatattttggcaccaatttttgtg
attacccaaagctatttgcttgtcttggatacaccgcaatgttttcctggatgggttgtt
gtatttcaagtatgacattggctgttataagagtttgtgatttgaatatgatgacacgga
tgaaaaagtgtttccaaggcaacaatccagagtactacgtgaaccttccgcacacctaca
acaacattataatggctatcatcctccaatccttcctattctgcatcttccacactttag
cagcttccctctacgcattcatgcaatttgttgcagctccaccaaatctaatcatattca
cacaaatcgtttggcaagctagtagtggctctgtgtgcattgtgtacctaaccctgaaca
aaactctgcgaacatctgtgatgagaatgttctgcccgaagccgattatctacggaacaa
ggatctccagtatgctgataaatagcaataatacaccacaaattcgttctccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTACTCAAAACTCCAGCCTATAA 101 231 224 Antisense
AATCTTCACCGGTTTCCTAGGATAT 403 169 300 Antisense
TATTTGCTTGTCTTGGATACACCGC 574 661 356 Antisense
GATACACCGCAATGTTTTCCTGGAT 438 423 371 Antisense
TCCGCACACCTACAACAACATTATA 180 595 510 Antisense
TATAATGGCTATCATCCTCCAATCC 243 661 531 Antisense
GCAAGCTAGTAGTGGCTCTGTGTGC 127 321 657 Antisense
TGTGCATTGTGTACCTAACCCTGAA 596 555 677 Antisense
TAACCCTGAACAAAACTCTGCGAAC 245 637 692 Antisense
TCTGCCCGAAGCCGATTATCTACGG 322 609 734 Antisense
ATACACCACAAATTCGTTCTCCACA 97 25 794 Antisense
Sequence Source Affymetrix Proprietary Database