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[179838_at]

Description B0035.15 /REP_DB=WormBase Gene ID /WP=CE05170 /TR=Q17439 /GB=CAA97417.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 43      6grp_total > 52      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 780.3
(-2.1)
P 		1289.3
(3)
P 		1095.6
(1.1)
P 		691.9
(-3)
P 		597
B 933.5
(-1.2)
P 		1294.6
(3)
P 		1090.3
(0.6)
P 		784.1
(-3)
P 		511
C 932.8
(-0.2)
P 		1182.8
(2.4)
P 		1242.2
(3)
P 		655.6
(-3)
P 		587
avr 882.2
(-1.1) 		1255.6
(3) 		1142.7
(1.8) 		710.5
(-3) 		545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 939
1 2 3 4 5 6 range
A 1007.4
(-0.1)
P 		1138.2
(2.2)
P 		1184.6
(3)
P 		1106.1
(1.6)
P 		885.9
(-2.2)
P 		840.5
(-3)
P 		344
B 967.9
(-3)
P 		1110.7
(-1.9)
P 		1727.6
(3)
P 		1067.3
(-2.2)
P 		1038.5
(-2.4)
P 		1018.4
(-2.6)
P 		760
C 902.2
(-1.6)
P 		1176.2
(1.7)
P 		1187.9
(1.8)
P 		1286.9
(3)
P 		788.4
(-3)
P 		1106.6
(0.8)
P 		499
avr 959.2
(-2.3) 		1141.7
(0.1) 		1366.7
(3) 		1153.4
(0.2) 		904.3
(-3) 		988.5
(-1.9) 		462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 284.1
(2.9)
P 		279.9
(2.8)
P 		286.4
(3)
P 		101.3
(-3)
P 		185
B 297.7
(2.1)
P 		319.7
(3)
P 		252.6
(0.4)
P 		167.1
(-3)
P 		153
C 308.8
(0.7)
P 		340.1
(1.3)
P 		432.9
(3)
P 		110.5
(-3)
P 		322
avr 296.9
(2.2) 		313.2
(2.7) 		324
(3) 		126.3
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 185.7
(-3)
P 		404.8
(3)
P 		258
(-1)
P 		280.5
(-0.4)
P 		267.3
(-0.8)
P 		204.6
(-2.5)
P 		219
B 336.8
(-0.7)
P 		369.7
(0.8)
P 		419.5
(2.9)
P 		282.7
(-3)
P 		421.9
(3)
P 		379.7
(1.2)
P 		139
C 334.4
(1.1)
P 		358.9
(2.4)
P 		302.3
(-0.5)
P 		258.8
(-2.8)
P 		255.1
(-3)
P 		370.4
(3)
P 		115
avr 285.6
(-2.3) 		377.8
(3) 		326.6
(0) 		274
(-3) 		314.8
(-0.6) 		318.2
(-0.4) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9865
Sequence Type Exemplar sequence
Representative Public ID B0035.15 NCBI
Target Description B0035.15 /REP_DB=WormBase Gene ID /WP=CE05170 /TR=Q17439 /GB=CAA97417.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069720 NCBI Caenorhabditis elegans B0035.15 (B0035.15) mRNA, complete cds. 11/11 None
SNAP00000035827 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11297060:11298219:-1 11/11 None
GENEFINDER00000035846 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11297060:11298219:-1 10/11 None
B0035.15 ENSEMBL cdna:known chromosome:CEL140:IV:11296983:11298221:-1 gene:B0035.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11297065-11298225(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0035.15
Entrez Gene 178039 Entrez gene
SwissProt Q17439 EMBL-EBI
WormBase CE05170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97417 Hypothetical protein B0035.15 [Caenorhabditis elegans] ref|NP_502121.1| B0035.15 [Caenorhabditis elegans] sp|Q17439|YQVW_CAEEL Hypothetical protein B0035.15 in chromosome IV 1.0E-151
blast CAA97417 Hypothetical protein B0035.15 [Caenorhabditis elegans] ref|NP_502121.1| B0035.15 [Caenorhabditis elegans] sp|Q17439|YQVW_CAEEL Hypothetical protein B0035.15 in chromosome IV 1.0E-148
blast CAE62047 Hypothetical protein CBG06063 [Caenorhabditis briggsae] 1.0E-130
blast CAE62047 Hypothetical protein CBG06063 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:179838_AT
gatcttcccactcgtgaatcggaatttctccatcggaatgatcccatctgggaatatggg
ttctacgagccgcccgttgaaagaattccgaaagataaattgatgttcaaagaagcgcta
gaatatcttcgattccgccaagagctactttccgattcaagttcaccagcacaaaaaaag
caagccgctgaatttgttgctgatcatgttgttacttctcgtgtaaatgcagaaacatta
gatgacatttatgaatattttcgaccatttgagagaaaggataaacaaaaagttgtcaat
cgtcatgcccttgcagctcttcaagatcatgtacaaggaaattcagatgaaagacgaatt
ttagacgaggcaaaggatgtcggaaaaaagattcgccatatcagtaacaatacgaaattc
ctggacgaatatcaacgactcgaagacgaagaaaaggataaggtccgagaagcaattgcc
cagctacgccaagaagaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCCCACTCGTGAATCGGAAT 196 419 268 Antisense
TCTCCATCGGAATGATCCCATCTGG 532 609 294 Antisense
GGAATATGGGTTCTACGAGCCGCCC 402 525 318 Antisense
CGAGCCGCCCGTTGAAAGAATTCCG 468 251 333 Antisense
GAATATCTTCGATTCCGCCAAGAGC 682 325 388 Antisense
TTTCCGATTCAAGTTCACCAGCACA 65 671 416 Antisense
AGCCGCTGAATTTGTTGCTGATCAT 491 83 450 Antisense
GCTGATCATGTTGTTACTTCTCGTG 387 295 466 Antisense
AAAGTTGTCAATCGTCATGCCCTTG 239 123 556 Antisense
GGTCCGAGAAGCAATTGCCCAGCTA 666 501 729 Antisense
TGCCCAGCTACGCCAAGAAGAACAT 138 583 744 Antisense
Sequence Source Affymetrix Proprietary Database