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[179836_at]

Description K07E8.5 /REP_DB=WormBase Gene ID /WP=CE11894 /TR=O16687 /GB=AAB66150.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 16      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 169.8
(1.9)
P 		95.8
(-0.7)
P 		31.8
(-3)
A 		200.4
(3)
P 		169
B 167.5
(1.9)
P 		96.7
(-1.4)
P 		62.9
(-3)
P 		190.3
(3)
P 		127
C 191.3
(2.9)
P 		73
(-3)
P 		81.3
(-2.6)
P 		193.1
(3)
P 		120
avr 176.2
(2.2) 		88.5
(-1.7) 		58.7
(-3) 		194.6
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 194.9
(3)
P 		120
(-0.6)
P 		69.5
(-3)
P 		85.6
(-2.2)
P 		123.7
(-0.4)
P 		98.6
(-1.6)
P 		125
B 139.7
(3)
P 		103.4
(0)
P 		113.6
(0.9)
P 		66
(-3)
P 		77.1
(-2.1)
P 		98.3
(-0.4)
P 		74
C 121.4
(1.5)
P 		146.7
(3)
P 		104.6
(0.5)
P 		106.9
(0.6)
P 		45.4
(-3)
P 		54.2
(-2.5)
P 		101
avr 152
(3) 		123.4
(0.5) 		95.9
(-1.8) 		86.2
(-2.6) 		82.1
(-3) 		83.7
(-2.9) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 61.8
(3)
P 		20.8
(-1.6)
P 		8.3
(-3)
A 		29.3
(-0.6)
P 		54
B 53.4
(3)
P 		23.9
(-1.6)
P 		14.6
(-3)
P 		40.6
(1)
P 		39
C 63.3
(3)
P 		21
(-3)
P 		28.3
(-2)
P 		32.6
(-1.4)
P 		42
avr 59.5
(3) 		21.9
(-2.3) 		17.1
(-3) 		34.2
(-0.6) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 35.9
(1.5)
P 		42.7
(3)
P 		15.1
(-3)
P 		21.7
(-1.6)
P 		37.3
(1.8)
P 		24
(-1.1)
P 		28
B 48.6
(3)
P 		34.4
(0.3)
P 		27.6
(-1.1)
P 		17.5
(-3)
P 		31.3
(-0.3)
P 		36.7
(0.7)
P 		31
C 45
(3)
P 		44.8
(3)
P 		26.6
(-0.6)
P 		21.5
(-1.7)
P 		14.7
(-3)
P 		18.1
(-2.3)
P 		30
avr 43.2
(3) 		40.6
(2.3) 		23.1
(-2.2) 		20.2
(-3) 		27.8
(-1) 		26.3
(-1.4) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5726
Sequence Type Exemplar sequence
Representative Public ID K07E8.5 NCBI
Target Description K07E8.5 /REP_DB=WormBase Gene ID /WP=CE11894 /TR=O16687 /GB=AAB66150.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061378 NCBI Caenorhabditis elegans K07E8.5 (K07E8.5) mRNA, complete cds. 11/11 None
SNAP00000018450 ENSEMBL cdna:SNAP chromosome:CEL140:II:650970:653924:1 11/11 None
GENEFINDER00000018463 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:650970:654422:1 10/11 None
K07E8.5 ENSEMBL cdna:known chromosome:CEL140:II:652000:653924:1 gene:K07E8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:651999-653924(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07E8.5
Entrez Gene 187113 Entrez gene
SwissProt O16687 EMBL-EBI
WormBase CE35992 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66150 Hypothetical protein K07E8.5 [Caenorhabditis elegans] ref|NP_493779.2| K07E8.5 [Caenorhabditis elegans] 1.0E-145
blast AAB66150 Hypothetical protein K07E8.5 [Caenorhabditis elegans] ref|NP_493779.2| K07E8.5 [Caenorhabditis elegans] 1.0E-144
blast CAE72388 Hypothetical protein CBG19545 [Caenorhabditis briggsae] 1.0E-108
blast CAE72388 Hypothetical protein CBG19545 [Caenorhabditis briggsae] 1.0E-103
blast AAB66150 Hypothetical protein K07E8.5 [Caenorhabditis elegans] ref|NP_493779.2| K07E8.5 [Caenorhabditis elegans] 1.0E-103
blast CAE72388 Hypothetical protein CBG19545 [Caenorhabditis briggsae] 5.0E-75
blast CAA94616 Hypothetical protein T14C1.1 [Caenorhabditis elegans] ref|NP_510400.2| T14C1.1 [Caenorhabditis elegans] 2.0E-40
blast CAA94616 Hypothetical protein T14C1.1 [Caenorhabditis elegans] ref|NP_510400.2| T14C1.1 [Caenorhabditis elegans] 2.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493779.2 7 18-40,52-69,73-95,107-125,165-187,200-222,237-259
K07E8.5 7 18-40,52-69,73-95,107-125,165-187,200-222,237-259
SNAP00000018450 8 34-56,71-93,104-121,125-147,159-177,217-239,252-274,289-311
GENEFINDER00000018463 7 34-56,71-93,106-128,133-155,167-185,225-247,260-282
Sequence
Target Sequence 
>C. ELEGANS:179836_AT
tgtactgcacgccgagacgggcaaaaatcacctgcgtagtgctcatgctcatctgcttca
tctacaacatcccgcacttcttcgagctggaaaaagtggactgtctagatgaagacggtc
gggattccatgcaaatctgcccgacagacatccggcttgatccagcctattacgcgatct
actacacctacatgtacaccacattcctggcgatcggcccgctgactcttctgatcttgc
tgaacatctgtgtggtgttcactgtagttaccaagggcagctctaatgagaatggagaag
acgacacaatatccctgatcctcgtggtgttcttcttcattttttgcaacttcaccgcgt
tgatggtcaattttatggagattatcctaaatgatccgtcaatgctggtgtacttcgtgg
atctctccaatctgctggtagtggtgaatgggacggccaacttcttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACTGCACGCCGAGACGGGCAAA 530 559 329 Antisense
AAATCACCTGCGTAGTGCTCATGCT 229 117 353 Antisense
GTCGGGATTCCATGCAAATCTGCCC 23 473 446 Antisense
CCGACAGACATCCGGCTTGATCCAG 561 263 469 Antisense
ATCCAGCCTATTACGCGATCTACTA 646 39 488 Antisense
GACTCTTCTGATCTTGCTGAACATC 141 375 552 Antisense
GAAGACGACACAATATCCCTGATCC 549 339 625 Antisense
TCGTGGTGTTCTTCTTCATTTTTTG 355 605 650 Antisense
GATCCGTCAATGCTGGTGTACTTCG 517 415 721 Antisense
GATCTCTCCAATCTGCTGGTAGTGG 430 419 748 Antisense
GAATGGGACGGCCAACTTCTTTTGC 342 333 774 Antisense
Sequence Source Affymetrix Proprietary Database